# STOCKHOLM 1.0 #=GF ID 1.20.960.20/FF/394 #=GF DE RNA1 polyprotein #=GF AC 1.20.960.20/FF/394 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 86.914 #=GS Q05057/2689-2780 AC Q05057 #=GS Q05057/2689-2780 OS Parsnip yellow fleck virus (isolate P-121) #=GS Q05057/2689-2780 DE Genome polyprotein #=GS Q05057/2689-2780 DR GENE3D; 202bbeef98dfb12411cd6046d80a4c0d/2689-2780; #=GS Q05057/2689-2780 DR ORG; Viruses; Picornavirales; Secoviridae; Sequivirus; Parsnip yellow fleck virus; #=GS Q05057/2689-2780 DR EC; 2.7.7.48; #=GS Q9IJX4/1675-1758 AC Q9IJX4 #=GS Q9IJX4/1675-1758 OS Cricket paralysis virus Teleogryllus commodus/Australia/CrPVVIC/1968 #=GS Q9IJX4/1675-1758 DE Replicase polyprotein #=GS Q9IJX4/1675-1758 DR GENE3D; 3864a00bbb223aa7d0abe0efced2eba5/1675-1758; #=GS Q9IJX4/1675-1758 DR ORG; Viruses; Picornavirales; Dicistroviridae; Cripavirus; Cricket paralysis virus; #=GS Q9IJX4/1675-1758 DR EC; 2.7.7.48; #=GS Q91PP5/3325-3418 AC Q91PP5 #=GS Q91PP5/3325-3418 OS Rice tungro spherical virus (isolate Vt6) #=GS Q91PP5/3325-3418 DE Genome polyprotein #=GS Q91PP5/3325-3418 DR GENE3D; 4ed6ccddde18bc68e1aada699a34d290/3325-3418; #=GS Q91PP5/3325-3418 DR ORG; Viruses; Picornavirales; Secoviridae; Waikavirus; Rice tungro spherical virus; #=GS Q91PP5/3325-3418 DR EC; 2.7.7.48; #=GS Q83034/3329-3420 AC Q83034 #=GS Q83034/3329-3420 OS Rice tungro spherical virus (isolate A) #=GS Q83034/3329-3420 DE Genome polyprotein #=GS Q83034/3329-3420 DR GENE3D; 8e6f592432858ec55c5de14e19ad8657/3329-3420; #=GS Q83034/3329-3420 DR ORG; Viruses; Picornavirales; Secoviridae; Waikavirus; Rice tungro spherical virus; #=GS Q83034/3329-3420 DR EC; 2.7.7.48; #=GS Q9WAL8/1849-1953 AC Q9WAL8 #=GS Q9WAL8/1849-1953 OS Satsuma dwarf virus S-58 #=GS Q9WAL8/1849-1953 DE RNA1 polyprotein #=GS Q9WAL8/1849-1953 DR GENE3D; 95562662fb88e0a4f80d1aec7ed144a3/1849-1953; #=GS Q9WAL8/1849-1953 DR ORG; Viruses; Picornavirales; Secoviridae; Sadwavirus; Satsuma dwarf virus; #=GS Q9WAL8/1849-1953 DR EC; 2.7.7.48; #=GS P18522/1880-2003 AC P18522 #=GS P18522/1880-2003 OS Beet ringspot virus #=GS P18522/1880-2003 DE RNA1 polyprotein #=GS P18522/1880-2003 DR GENE3D; 99f4fd107dd2fec48d3e27e0e75f10e1/1880-2003; #=GS P18522/1880-2003 DR ORG; Viruses; Picornavirales; Secoviridae; Comovirinae; Nepovirus; Beet ringspot virus; #=GS P18522/1880-2003 DR EC; 2.7.7.48; #=GS O36966/1663-1748 AC O36966 #=GS O36966/1663-1748 OS Drosophila C virus strain EB #=GS O36966/1663-1748 DE Replicase polyprotein #=GS O36966/1663-1748 DR GENE3D; be1d311432c3d8bc24142ccc8ec09869/1663-1748; #=GS O36966/1663-1748 DR ORG; Viruses; Picornavirales; Dicistroviridae; Cripavirus; Drosophila C virus; #=GS O36966/1663-1748 DR EC; 2.7.7.48; #=GS Q769F2/141-231 AC Q769F2 #=GS Q769F2/141-231 OS Satsuma dwarf virus #=GS Q769F2/141-231 DE RNA dependent RNA polymerase #=GS Q769F2/141-231 DR GENE3D; 1b1f4dd5719409a992c3aedef9c49b0a/141-231; #=GS Q769F2/141-231 DR ORG; Viruses; Picornavirales; Secoviridae; Sadwavirus; Satsuma dwarf virus; #=GS A4UVR7/85-191 AC A4UVR7 #=GS A4UVR7/85-191 OS Citrus mosaic sadwavirus #=GS A4UVR7/85-191 DE RNA-dependent RNA polymerase #=GS A4UVR7/85-191 DR GENE3D; 1d49165f34f9630de8e493958765ec48/85-191; #=GS A4UVR7/85-191 DR ORG; Viruses; Picornavirales; Secoviridae; Sadwavirus; Satsuma dwarf virus; #=GS G0Y2R0/53-133 AC G0Y2R0 #=GS G0Y2R0/53-133 OS Broad bean wilt virus 2 #=GS G0Y2R0/53-133 DE RNA-dependent RNA polymerase #=GS G0Y2R0/53-133 DR GENE3D; 2061a87219c3ef0420f8734b9232c335/53-133; #=GS G0Y2R0/53-133 DR ORG; Viruses; Picornavirales; Secoviridae; Comovirinae; Fabavirus; Broad bean wilt virus 2; #=GS U3PXD8/660-714 AC U3PXD8 #=GS U3PXD8/660-714 OS Cucurbit mild mosaic virus #=GS U3PXD8/660-714 DE Polyprotein #=GS U3PXD8/660-714 DR GENE3D; 3c7b712a5f962ec5ce5efdb8c15bd9e8/660-714; #=GS U3PXD8/660-714 DR ORG; Viruses; Picornavirales; Secoviridae; Comovirinae; Fabavirus; Cucurbit mild mosaic virus; #=GS Q9YZ97/638-743 AC Q9YZ97 #=GS Q9YZ97/638-743 OS Navel orange infectious mottling virus #=GS Q9YZ97/638-743 DE Polyprotein #=GS Q9YZ97/638-743 DR GENE3D; 4f01515fc03833c1a217bd9b6186a452/638-743; #=GS Q9YZ97/638-743 DR ORG; Viruses; Picornavirales; Secoviridae; Sadwavirus; Satsuma dwarf virus; #=GS Q98645/1473-1566 AC Q98645 #=GS Q98645/1473-1566 OS Rice tungro spherical virus #=GS Q98645/1473-1566 DE ORF1 protein #=GS Q98645/1473-1566 DR GENE3D; 5129e0b068037e1e123710d4ff7ed0e6/1473-1566; #=GS Q98645/1473-1566 DR ORG; Viruses; Picornavirales; Secoviridae; Waikavirus; Rice tungro spherical virus; #=GS G2XKC3/1562-1616 AC G2XKC3 #=GS G2XKC3/1562-1616 OS Cucurbit mild mosaic virus #=GS G2XKC3/1562-1616 DE Genome polyprotein #=GS G2XKC3/1562-1616 DR GENE3D; 61db9b584f72ec686804e77d8a7f866d/1562-1616; #=GS G2XKC3/1562-1616 DR ORG; Viruses; Picornavirales; Secoviridae; Comovirinae; Fabavirus; Cucurbit mild mosaic virus; #=GS A0A0N9E2F2/3280-3371 AC A0A0N9E2F2 #=GS A0A0N9E2F2/3280-3371 OS Bellflower vein chlorosis virus #=GS A0A0N9E2F2/3280-3371 DE Genome polyprotein #=GS A0A0N9E2F2/3280-3371 DR GENE3D; 69e181cb35c11fcad4610fe8af982a1a/3280-3371; #=GS A0A0N9E2F2/3280-3371 DR ORG; Viruses; Picornavirales; Secoviridae; Waikavirus; Bellflower vein chlorosis virus; #=GS Q8V978/1612-1678 AC Q8V978 #=GS Q8V978/1612-1678 OS Patchouli mild mosaic virus #=GS Q8V978/1612-1678 DE Genome polyprotein #=GS Q8V978/1612-1678 DR GENE3D; 893706e17c5d5513492a116d60c1248c/1612-1678; #=GS Q8V978/1612-1678 DR ORG; Viruses; Picornavirales; Secoviridae; Comovirinae; Fabavirus; Broad bean wilt virus 2; #=GS B6UIR8/2680-2769 AC B6UIR8 #=GS B6UIR8/2680-2769 OS Carrot necrotic dieback virus #=GS B6UIR8/2680-2769 DE Genome polyprotein #=GS B6UIR8/2680-2769 DR GENE3D; a2c23d123cc8d0f66d00b59c093057c2/2680-2769; #=GS B6UIR8/2680-2769 DR ORG; Viruses; Picornavirales; Secoviridae; Sequivirus; Carrot necrotic dieback virus; #=GS R4UYF6/1611-1679 AC R4UYF6 #=GS R4UYF6/1611-1679 OS Broad bean wilt virus 2 #=GS R4UYF6/1611-1679 DE Genome polyprotein #=GS R4UYF6/1611-1679 DR GENE3D; a5de643f243406998de913bc10b7f0a7/1611-1679; #=GS R4UYF6/1611-1679 DR ORG; Viruses; Picornavirales; Secoviridae; Comovirinae; Fabavirus; Broad bean wilt virus 2; #=GS Q5MH31/3335-3427 AC Q5MH31 #=GS Q5MH31/3335-3427 OS Maize chlorotic dwarf virus #=GS Q5MH31/3335-3427 DE Genome polyprotein #=GS Q5MH31/3335-3427 DR GENE3D; d323f489b4d6bb510f73f94362921658/3335-3427; #=GS Q5MH31/3335-3427 DR ORG; Viruses; Picornavirales; Secoviridae; Waikavirus; Maize chlorotic dwarf virus; #=GS O12662/217-271 AC O12662 #=GS O12662/217-271 OS Broad bean wilt virus 2 #=GS O12662/217-271 DE Putative RNA polymerase #=GS O12662/217-271 DR GENE3D; 68bf7afb1ef2401a6e0cb3a8c5567866/217-271; #=GS O12662/217-271 DR ORG; Viruses; Picornavirales; Secoviridae; Comovirinae; Fabavirus; Broad bean wilt virus 2; #=GS Q8UYV9/1668-1760 AC Q8UYV9 #=GS Q8UYV9/1668-1760 OS Strawberry mottle virus #=GS Q8UYV9/1668-1760 DE Polyprotein #=GS Q8UYV9/1668-1760 DR GENE3D; 2213c5ed0ba617874139272271c79e92/1668-1760; #=GS Q8UYV9/1668-1760 DR ORG; Viruses; Picornavirales; Secoviridae; Strawberry mottle virus; #=GF TC 70.7 9.7E-23 #=GF SQ 21 Q05057/2689-2780 ----FKADEL-IPSLFHAPLHKRSIEEQVYWI-----------REGG-----NSLELLEANIENALYEAHHH-GREYYEELKDQIKKAMNRAGY-MSFVAPSYLMCRQRW-LQQDL----------------- Q9IJX4/1675-1758 ----FVFSHQ-LQRTV-APLQKDVIYEMLNWT-----------RNTI-----DPNEILMMNINTAFREIVYH-GKSEYQKLRSGIEDLAMKGILPQQPQILTFKAYL-------------------------- Q91PP5/3325-3418 ---GFERVES-SGFLWKAPLDKTSIEERLNWI-----------RDCP-----TPVEALEQNIESALHEAAIH-GRDYFDDLVQRLNSALKRVML--PPTDISFEECQARWWASVTGD---------------- Q83034/3329-3420 ----FERVES-SGFLWKAPLDKTSIEERLNWI-----------RDCP-----TPVEALEQNIESALHEAAIH-GRDYFDDLVRRLNSALTRVML--PPTDISFEECQARWWASVTG----------------- Q9WAL8/1849-1953 --RQFVADSG-STAIL-CPLKKISIEERLFYV-----------RGGQ-----DEIAALELNIATALCEAFFH-GKEYFSFLEGKIIEAMRKSGV-ALSRPLPTMESVRAWYMSQRGNTKIRSPS-----FEG- P18522/1880-2003 -KRKFLKLD---NGIVQAPLDRSAIFSSLYWLTPDKSKFHASQRASDFQGTVDVVEELILNVNVALMELYLHNDPREFSRVRDFYIKALPLA----TGQFRTWAFCEAFHSAQQTGMLKY-DPAKVLDHMSGL O36966/1663-1748 ----FRFSPE-LQRHV-APLKIEVIYEMLNWS-----------RRSI-----DPDEILMSNIETAFREVVYH-GKEEYDKLRSAVLALKVPQELPENPQILTYNQYLHD------------------------ Q769F2/141-231 -KRKFVADSK-STAIL-CPLNKRSIEERLFYV-----------RGGQ-----DEIAALELNIATALCEAFFH-GQEYFSFLEREINKAVLKSKI-TLTKPLPTMDSIRVWYL--------------------- A4UVR7/85-191 LKRQFIADSG-STAIL-CPLKKISIEERLFYV-----------KGGQ-----DELAALELNVATALCEAFFH-GKEYFALLEKRIIEAVHKSGI-RLTKPLPTMESIRVWYLSQRSNTKVRSPS-----YEG- G0Y2R0/53-133 --RSFKMSP---DGTWRSPMSKESLWPQLHFV-----------KAKK----LEMAEAYINNCNNILRELWLH-DVKEAKEFRNKVLKNLRWVGH------------EQLLNMQQ------------------- U3PXD8/660-714 --RSFKENF---DGTWRAPMDRTSLWPQLHFV-----------KAKD----IELVEAYISNLNNVLRELYLH-SPE--------------------------------------------------------- Q9YZ97/638-743 -KRQFVADAG-STAIL-CPLKKISIEERLFYV-----------KGGQ-----DELAALELNMATALCEAFFH-GKEYFRFLEAEILKAVRKSRI-SLTKPLPTMESIRVWYLSQRTNTKVRSPS-----YEG- Q98645/1473-1566 ---GFERVES-SGFLWKAPLDKTSIEERLNWI-----------RDCP-----TPVEALEQNIESALHEAAIH-GRDYFDDLVQRLNSALKRVML--PPTDISFEECQARWWASVTGD---------------- G2XKC3/1562-1616 --RSFKENF---DGTWRAPMDRTSLWPQLHFV-----------KAKD----IELVEAYISNLNNVLRELYLH-SPE--------------------------------------------------------- A0A0N9E2F2/3280-3371 ----FKRVDN-TGCLWKAPLDRTSIEERCNWI-----------RECE-----VPQEALYQNIESALFEASIH-GKDYFMDLKNRLDFALDRVML--PKTKESFKQCQARWWSDMTG----------------- Q8V978/1612-1678 --RSFKMSP---DGTWRSPMSKESLWPQLHFV-----------KAKK----LEMAEAYINNCNNILRELWLH-DVKEAKEFRNKVLRN--------------------------------------------- B6UIR8/2680-2769 ----FRPDEL-IPSLFHAPLHKRSIEEQVYWI-----------REGG-----DSLALLEANIENAMYEAHHH-GREYYNELKQQVKEAMHKAGY-TNFVAPTFLMCRQRW-LHQ------------------- R4UYF6/1611-1679 --RSFKLNP---DGTWRSPMSKESLWPQLHYV-----------KAKK----LEMAEAYINNCNNILRELWLH-DVTEAKEFRNRVLRNLK------------------------------------------- Q5MH31/3335-3427 ----WTSIGGQLSTIYKAPLETTSIEERLHWI-----------RECD-----DDIEALNQNIESALYEASIH-GPIYFGNLKARIDEACDAVMI--PESTTTYKDCQRRWWTSMTG----------------- O12662/217-271 --RSFKMSP---DGTWRSPMSKESLWPQLHFV-----------KAKK----LEMAEAYINNCNNILRELWLH-DVK--------------------------------------------------------- Q8UYV9/1668-1760 ---RWVLYSG--QGFL-CPLHKSAIEERLFWV-----------RSSE-----DSVETLDDNCYSALMEAFHH-GRDYFNFLRARIQDAYDKAGL-YQPHLLHFNEAQAIW-LEQHSIA--------------- #=GC scorecons 0021732331013344259746366355745600000000000743300000534656339444673953490634342243233224212212001111122112121211111100000000000000000 #=GC scorecons_70 ____*_____________**_*_**___*______________*___________*____*____*_*___*_____________________________________________________________ #=GC scorecons_80 ____*_____________*_________*_______________________________*____*_*___*_____________________________________________________________ #=GC scorecons_90 __________________*_________________________________________*______*___*_____________________________________________________________ //