# STOCKHOLM 1.0 #=GF ID 1.20.930.10/FF/1166 #=GF DE Transcription factor IIS family protein #=GF AC 1.20.930.10/FF/1166 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 95.910 #=GS Q3E914/18-109 AC Q3E914 #=GS Q3E914/18-109 OS Arabidopsis thaliana #=GS Q3E914/18-109 DE Transcription factor IIS family protein #=GS Q3E914/18-109 DR GENE3D; b98ab5cd2e0a8ff9a5b5dd8442e2caf4/18-109; #=GS Q3E914/18-109 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q3E914/18-109 DR GO; GO:0005774; #=GS A0A178VX71/209-281 AC A0A178VX71 #=GS A0A178VX71/209-281 OS Arabidopsis thaliana #=GS A0A178VX71/209-281 DE Uncharacterized protein #=GS A0A178VX71/209-281 DR GENE3D; 15e87c97ff3d6812f51daf38400437e0/209-281; #=GS A0A178VX71/209-281 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q6RF44/158-249 AC Q6RF44 #=GS Q6RF44/158-249 OS Arabidopsis thaliana #=GS Q6RF44/158-249 DE Putative uncharacterized protein #=GS Q6RF44/158-249 DR GENE3D; 3937cef7838ee15d3a0b9068b885b407/158-249; #=GS Q6RF44/158-249 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q8S8S0/243-333 AC Q8S8S0 #=GS Q8S8S0/243-333 OS Arabidopsis thaliana #=GS Q8S8S0/243-333 DE Putative uncharacterized protein At2g32820 #=GS Q8S8S0/243-333 DR GENE3D; 5a5ac52fb82879cef2a6f6f174042a93/243-333; #=GS Q8S8S0/243-333 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q9ZUX9/16-107 AC Q9ZUX9 #=GS Q9ZUX9/16-107 OS Arabidopsis thaliana #=GS Q9ZUX9/16-107 DE Putative uncharacterized protein At2g27780 #=GS Q9ZUX9/16-107 DR GENE3D; 68edaaa12efcefbd04d82067c94898b0/16-107; #=GS Q9ZUX9/16-107 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q9SIT3/18-109 AC Q9SIT3 #=GS Q9SIT3/18-109 OS Arabidopsis thaliana #=GS Q9SIT3/18-109 DE Putative uncharacterized protein At2g13640 #=GS Q9SIT3/18-109 DR GENE3D; 7c7c6ba079a9dc21c9b8d0d77a480169/18-109; #=GS Q9SIT3/18-109 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS F4IUQ8/158-249 AC F4IUQ8 #=GS F4IUQ8/158-249 OS Arabidopsis thaliana #=GS F4IUQ8/158-249 DE Transcription elongation factor (TFIIS) family protein #=GS F4IUQ8/158-249 DR GENE3D; af033768e9f1d0a21d22d3fede3bd0ad/158-249; #=GS F4IUQ8/158-249 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q552X2/1324-1396 AC Q552X2 #=GS Q552X2/1324-1396 OS Dictyostelium discoideum #=GS Q552X2/1324-1396 DE Putative mediator of RNA polymerase II transcription subunit 26 #=GS Q552X2/1324-1396 DR GENE3D; 1ae89713e6f8b44690fe4be14af65530/1324-1396; #=GS Q552X2/1324-1396 DR ORG; Eukaryota; Dictyosteliida; Dictyostelium; Dictyostelium discoideum; #=GS Q552X2/1324-1396 DR GO; GO:0001104; GO:0006357; GO:0016592; #=GS M4CN18/185-288 AC M4CN18 #=GS M4CN18/185-288 OS Brassica rapa subsp. pekinensis #=GS M4CN18/185-288 DE Uncharacterized protein #=GS M4CN18/185-288 DR GENE3D; 01bd6d376bf937d507cbeec9759782c2/185-288; #=GS M4CN18/185-288 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; #=GS R0HSE3/270-343 AC R0HSE3 #=GS R0HSE3/270-343 OS Capsella rubella #=GS R0HSE3/270-343 DE Uncharacterized protein #=GS R0HSE3/270-343 DR GENE3D; 12ae768bfdb3183d10ad640cc7db7614/270-343; #=GS R0HSE3/270-343 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; #=GS A0A0D3BSQ9/141-243 AC A0A0D3BSQ9 #=GS A0A0D3BSQ9/141-243 OS Brassica oleracea var. oleracea #=GS A0A0D3BSQ9/141-243 DE Uncharacterized protein #=GS A0A0D3BSQ9/141-243 DR GENE3D; 1bd8d31040bf96e1afa9a5813ec85f20/141-243; #=GS A0A0D3BSQ9/141-243 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; #=GS D7LIZ7/22-109 AC D7LIZ7 #=GS D7LIZ7/22-109 OS Arabidopsis lyrata subsp. lyrata #=GS D7LIZ7/22-109 DE Binding protein #=GS D7LIZ7/22-109 DR GENE3D; 23f3b7e31b242011464dbdb5034cdd3d/22-109; #=GS D7LIZ7/22-109 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; #=GS A0A078FGV0/188-293 AC A0A078FGV0 #=GS A0A078FGV0/188-293 OS Brassica napus #=GS A0A078FGV0/188-293 DE BnaC04g12220D protein #=GS A0A078FGV0/188-293 DR GENE3D; 2a1a2957627dc76414440e767dee01c3/188-293; #=GS A0A078FGV0/188-293 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; #=GS M4CMY1/142-243 AC M4CMY1 #=GS M4CMY1/142-243 OS Brassica rapa subsp. pekinensis #=GS M4CMY1/142-243 DE Uncharacterized protein #=GS M4CMY1/142-243 DR GENE3D; 36a45ab9c206084cf69de48d8fe5e4de/142-243; #=GS M4CMY1/142-243 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; #=GS A0A0D3BSR1/188-293 AC A0A0D3BSR1 #=GS A0A0D3BSR1/188-293 OS Brassica oleracea var. oleracea #=GS A0A0D3BSR1/188-293 DE Uncharacterized protein #=GS A0A0D3BSR1/188-293 DR GENE3D; 5cb992a83aaefcafcdb3c425fc3639ad/188-293; #=GS A0A0D3BSR1/188-293 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; #=GS A0A078GRJ0/225-326 AC A0A078GRJ0 #=GS A0A078GRJ0/225-326 OS Brassica napus #=GS A0A078GRJ0/225-326 DE BnaC09g18210D protein #=GS A0A078GRJ0/225-326 DR GENE3D; 70c54801b1c5c7bf2e2ec8282ab82416/225-326; #=GS A0A078GRJ0/225-326 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; #=GS M4CN20/132-232 AC M4CN20 #=GS M4CN20/132-232 OS Brassica rapa subsp. pekinensis #=GS M4CN20/132-232 DE Uncharacterized protein #=GS M4CN20/132-232 DR GENE3D; 7c0e3bb847dd0c2401fc8eac8f1e44d8/132-232; #=GS M4CN20/132-232 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; #=GS A0A078FGQ1/86-185 AC A0A078FGQ1 #=GS A0A078FGQ1/86-185 OS Brassica napus #=GS A0A078FGQ1/86-185 DE BnaC04g12190D protein #=GS A0A078FGQ1/86-185 DR GENE3D; 9abf8381ba6563ab53f9ba582659115e/86-185; #=GS A0A078FGQ1/86-185 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; #=GS A0A078J226/188-295 AC A0A078J226 #=GS A0A078J226/188-295 OS Brassica napus #=GS A0A078J226/188-295 DE BnaAnng16190D protein #=GS A0A078J226/188-295 DR GENE3D; aa187203c3f193716cf7e24940f60bf6/188-295; #=GS A0A078J226/188-295 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; #=GS M4CMY3/188-295 AC M4CMY3 #=GS M4CMY3/188-295 OS Brassica rapa subsp. pekinensis #=GS M4CMY3/188-295 DE Uncharacterized protein #=GS M4CMY3/188-295 DR GENE3D; aa187203c3f193716cf7e24940f60bf6/188-295; #=GS M4CMY3/188-295 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; #=GS A0A078J5R5/139-240 AC A0A078J5R5 #=GS A0A078J5R5/139-240 OS Brassica napus #=GS A0A078J5R5/139-240 DE BnaAnng16160D protein #=GS A0A078J5R5/139-240 DR GENE3D; be528286e0bd0b56ef810237ab393a56/139-240; #=GS A0A078J5R5/139-240 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; #=GS A0A078JAV7/134-232 AC A0A078JAV7 #=GS A0A078JAV7/134-232 OS Brassica napus #=GS A0A078JAV7/134-232 DE BnaA05g35150D protein #=GS A0A078JAV7/134-232 DR GENE3D; beb8bc43cad34c8f110f82d713a19156/134-232; #=GS A0A078JAV7/134-232 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; #=GS A0A078FJD3/139-238 AC A0A078FJD3 #=GS A0A078FJD3/139-238 OS Brassica napus #=GS A0A078FJD3/139-238 DE BnaC04g12580D protein #=GS A0A078FJD3/139-238 DR GENE3D; ce30cb7ccb71f1b4ed67d65ee790b91e/139-238; #=GS A0A078FJD3/139-238 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; #=GF TC 74.6 6.4E-24 #=GF SQ 23 Q3E914/18-109 ------------SDLCDLTAAAIKATYNTRNP-------CEV----ERCIDVLNHLKSLSLSVKDIELSESIVK-LETLRSHRNPRIRKEAQALFHSWLKTFYAHGSDNSFKAALT-- A0A178VX71/209-281 -----------------------KAA-DVANAKGVLSDKPEA----SCCIDALSLLKKINITPKPKEPRRMMDK-LEGLTKHKDRKICHVASALLHLWRQRI---------------- Q6RF44/158-249 ---------KNSPEMLELFEMAKKSA-DVANAKGFLAAKEEA----SICVDILALLMKFSIISTAIETRRIMEK-LERLTKHKDRKICNAALALLHHWRQTIRNQQQ----------- Q8S8S0/243-333 ----------NSPEMLELFEMAKKSA-DVANAKGFLAAKEEA----SICVDILALLMKFSIISTAIETRRIMEK-LERLTKHKDRKICNAALALLHHWRQTIRNQQQ----------- Q9ZUX9/16-107 ------------SDLCDLTAAAIKATYNTRNP-------CEV----ERCIDVLNHLKSLSLSVKDIRLSESIVK-LETLRSHRNPRIRKAAQALFHSWLKTFYAHGSDNSFKAALT-- Q9SIT3/18-109 ------------SDLCDLTAAAIKATYNTRNP-------CEV----ERCIDVLNHLKSLSLSVKDIRLSESIVK-LETLRSHRNPRIRKEAQALFHSWLKTFYAHGSDNSFTAALT-- F4IUQ8/158-249 ---------KNSPEMLELFEMAKKSA-DVANAKGFLAAKEEA----SICVDILALLMKFSIISTAIETRRIMEK-LERLTKHKDRKICNAALALLHHWRQTIRNQQQ----------- Q552X2/1324-1396 -----------------------------ANIHTVLKYSQETVTIPRDTIIALKGLKGLPVTVEHLHAEKLIGKTIRSFKKHSNPNVKEYAEELESEWMYLI---------------- M4CN18/185-288 --SRNP----RTEEMVELFEAAKKAA-DVANAKGILSGKADA----SRCVEAILLLTKMNVTPKPNEPRRMIER-LQVLTKHKDRAICNAASALLQLWRQRIREEERKESSAIKNP-- R0HSE3/270-343 ----------------------KKAA-DVANAKGVLYGKVEA----SRCIDALSLLMKINITPKPKEPTRMMEK-LERLTKHKDRKICHASSALLQLWRQKI---------------- A0A0D3BSQ9/141-243 ----NPNSAGETEEMVELLEAAKKAA-DVANAKGILSGKSDA----LRCVEAISLLMKMNVTPKPNEPRRMFER-LERLSKHKDRTICSAATTLLQLWRQRIREQERKAASAI----- D7LIZ7/22-109 ----------------DWTAAAIKATYNTRNP-------CEV----ERCIDVLKHLKSLSLSAKDIELSESIVK-LETLRSHRNPRIRKEAQALFHSWLKTFYTHGSDNSFDVTKA-- A0A078FGV0/188-293 KASRNP----KTEEMVELFEAAKKAA-DVANAKGILSGKSDA----LRCVEAISLLMKMNVTPKPNEPRKMIER-LERLAKHKDRTICSAATTLLQIWRQRIREQERKESSAIKNP-- M4CMY1/142-243 -----PNSAGETEEMVELFEAAKKAA-DVANAKGILSGKADA----LRCVEAISLLVKMNVTPKPNEPRRMIER-LQVLTKHKDRAICNAASALLQIWRQRTREQERKAASTI----- A0A0D3BSR1/188-293 KASRNP----KTEEMVELFEAAKKAA-DVANAKGILSGKSDA----LRCVEAISLLMKMNVTPKPNEPRKMIER-LERLAKHKDRTICSAATTLLQIWRQRIREQERKESSAIKNP-- A0A078GRJ0/225-326 ------KPAGKTEEMVELFEAAKKAA-DVANAKCIYS--LWQ----SRCVEAISLLMKINVTPNLKESRRMIER-LQVLTKHKDRTICNAAKALLQLWTQRIREQERKESA-IKNPR- M4CN20/132-232 ------NSAGETEEMVELFEAAKKAA-DVANAKGILSGKADA----SRCVEAISLLMKMNATPKPNEPRRMLER-LQVLTKHKDRTICNAASALLQLWRQRIREQETKAASTI----- A0A078FGQ1/86-185 ---KNP----NSAEMVELFEAAKKAA-DVANAKGILSGKSDA----LRCVEAISLLMKMNVTPKPNEPRRMIER-LQVLTKHKDRTICNAAKALLQLWTQRIREQERKAASTI----- A0A078J226/188-295 KASRNP----KTEEMVELFEAAKKAA-DVANAKGILSGKADA----LRCVEAISLLMKMNVTPKPNEPRRMIER-LERLAKHKDRTICSAATALLQLWRQRIREEERKESSATKNPRK M4CMY3/188-295 KASRNP----KTEEMVELFEAAKKAA-DVANAKGILSGKADA----LRCVEAISLLMKMNVTPKPNEPRRMIER-LERLAKHKDRTICSAATALLQLWRQRIREEERKESSATKNPRK A0A078J5R5/139-240 -----PNSTGETEEMVELFEAAKKAA-DVANAKGILSGKADA----LRCVEAISLLVKMNVTPKPNEPRRMLER-LQGLTKHKDRTICNAASALLQLWRQRIREDETKAASTI----- A0A078JAV7/134-232 --------AGETEEMVELFEAAKKAA-DVANAKGILSGKADA----SRCVEAISLLMKKNATPKPNEPRRMVER-LQGLTKHKDRTICNAASALLQLWRQRIREQETKAASTI----- A0A078FJD3/139-238 ---KNP----NSAEMVELFEAAKKAA-DVANAKGILSGKADA----LRCVEAISLLMKMNVTPKPNEPRRMIER-LQVLTKHKDRTICNAASALLQLWRQRTREQERKAASTI----- #=GC scorecons 0000010000122442453446476505569644343233650000357766645945555556446456565708638469666485458379663946463333322321200100 #=GC scorecons_70 _______________________**____**_________*_______**__*__*_______*__*____*_*_**_*_****__*___*_**___*_*__________________ #=GC scorecons_80 _______________________*______*_________________*______*___________________*__*__*____*___*__*___*____________________ #=GC scorecons_90 ______________________________*________________________*___________________*__*__*____*___*__*___*____________________ //