# STOCKHOLM 1.0 #=GF ID 1.20.58.390/FF/2670 #=GF DE Ligand-gated ion channel 50 #=GF AC 1.20.58.390/FF/2670 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 57.060 #=GS Q9GQ00/237-337_450-489 AC Q9GQ00 #=GS Q9GQ00/237-337_450-489 OS Caenorhabditis elegans #=GS Q9GQ00/237-337_450-489 DE Serotonin-gated chloride channel #=GS Q9GQ00/237-337_450-489 DR GENE3D; 2baa8f1443a9048e7a1c0a92ae31a9eb/237-337_450-489; #=GS Q9GQ00/237-337_450-489 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; #=GS Q9GQ00/237-337_450-489 DR GO; GO:0004993; GO:0005230; GO:0005254; GO:0005887; GO:0006821; GO:0007210; GO:0042595; GO:0043025; GO:1904123; #=GS H2L0B8/237-357 AC H2L0B8 #=GS H2L0B8/237-357 OS Caenorhabditis elegans #=GS H2L0B8/237-357 DE Uncharacterized protein #=GS H2L0B8/237-357 DR GENE3D; 7176f9fba15e48e6fa4c82692131261b/237-357; #=GS H2L0B8/237-357 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; #=GS H2L0B8/237-357 DR GO; GO:0004993; GO:0005230; GO:0005254; GO:0005887; GO:0006821; GO:0007210; GO:0042595; GO:0043025; #=GS Q8MPU3/237-337_436-475 AC Q8MPU3 #=GS Q8MPU3/237-337_436-475 OS Caenorhabditis elegans #=GS Q8MPU3/237-337_436-475 DE Uncharacterized protein #=GS Q8MPU3/237-337_436-475 DR GENE3D; fd2dda4db633fdbb531cad10987a738c/237-337_436-475; #=GS Q8MPU3/237-337_436-475 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; #=GS Q8MPU3/237-337_436-475 DR GO; GO:0004993; GO:0005230; GO:0005254; GO:0005887; GO:0006821; GO:0007210; GO:0042595; GO:0043025; #=GS P41849/235-333_454-490 AC P41849 #=GS P41849/235-333_454-490 OS Caenorhabditis elegans #=GS P41849/235-333_454-490 DE Ligand-gated ion channel 50 #=GS P41849/235-333_454-490 DR GENE3D; ab9aa878d1c3f072037d924232c79c83/235-333_454-490; #=GS P41849/235-333_454-490 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; #=GS A0A183FQA6/225-394 AC A0A183FQA6 #=GS A0A183FQA6/225-394 OS Heligmosomoides polygyrus bakeri #=GS A0A183FQA6/225-394 DE Uncharacterized protein #=GS A0A183FQA6/225-394 DR GENE3D; 21bdab778bb55708cf52c58c4afb9a10/225-394; #=GS A0A183FQA6/225-394 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Trichostrongyloidea; Heligmosomatidae; Heligmosomoides; Heligmosomoides polygyrus; Heligmosomoides polygyrus bakeri; #=GS A8X863/203-301_411-447 AC A8X863 #=GS A8X863/203-301_411-447 OS Caenorhabditis briggsae #=GS A8X863/203-301_411-447 DE Protein CBR-LGC-50 #=GS A8X863/203-301_411-447 DR GENE3D; e46955c3f966bc4341c5dbc83261631b/203-301_411-447; #=GS A8X863/203-301_411-447 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; #=GS E3N6Q0/234-332_445-481 AC E3N6Q0 #=GS E3N6Q0/234-332_445-481 OS Caenorhabditis remanei #=GS E3N6Q0/234-332_445-481 DE CRE-LGC-50 protein #=GS E3N6Q0/234-332_445-481 DR GENE3D; a85984f8147a62b379ad9d5f7e1a4ba3/234-332_445-481; #=GS E3N6Q0/234-332_445-481 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; #=GS A8XUW2/238-338_451-490 AC A8XUW2 #=GS A8XUW2/238-338_451-490 OS Caenorhabditis briggsae #=GS A8XUW2/238-338_451-490 DE Protein CBR-MOD-1 #=GS A8XUW2/238-338_451-490 DR GENE3D; bb0ccbb8c8776464b2bbbb890c06ac14/238-338_451-490; #=GS A8XUW2/238-338_451-490 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; #=GS A0A016V2Y4/246-344_445-481 AC A0A016V2Y4 #=GS A0A016V2Y4/246-344_445-481 OS Ancylostoma ceylanicum #=GS A0A016V2Y4/246-344_445-481 DE Uncharacterized protein #=GS A0A016V2Y4/246-344_445-481 DR GENE3D; c4fd61c04d38dc083bf886473a24628d/246-344_445-481; #=GS A0A016V2Y4/246-344_445-481 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma ceylanicum; #=GS M9MR50/233-332_435-463 AC M9MR50 #=GS M9MR50/233-332_435-463 OS Haemonchus contortus #=GS M9MR50/233-332_435-463 DE Serotonin-gated chloride channel subunit #=GS M9MR50/233-332_435-463 DR GENE3D; f1027e323c36ef2a9af87600a32100c7/233-332_435-463; #=GS M9MR50/233-332_435-463 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Trichostrongyloidea; Haemonchidae; Haemonchinae; Haemonchus; Haemonchus contortus; #=GS G0MG09/238-336_461-497 AC G0MG09 #=GS G0MG09/238-336_461-497 OS Caenorhabditis brenneri #=GS G0MG09/238-336_461-497 DE Putative uncharacterized protein #=GS G0MG09/238-336_461-497 DR GENE3D; 56d1c67a76e08e2ba0bd471668558a42/238-336_461-497; #=GS G0MG09/238-336_461-497 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; #=GS A0A016U5M1/232-331_430-471 AC A0A016U5M1 #=GS A0A016U5M1/232-331_430-471 OS Ancylostoma ceylanicum #=GS A0A016U5M1/232-331_430-471 DE Uncharacterized protein #=GS A0A016U5M1/232-331_430-471 DR GENE3D; cfddc3c3419d860fd115420949ec887c/232-331_430-471; #=GS A0A016U5M1/232-331_430-471 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma ceylanicum; #=GS K7GZB4/73-171_280-304 AC K7GZB4 #=GS K7GZB4/73-171_280-304 OS Caenorhabditis japonica #=GS K7GZB4/73-171_280-304 DE Uncharacterized protein #=GS K7GZB4/73-171_280-304 DR GENE3D; d0f5e7f9523d37993eb74ee0b1ccc441/73-171_280-304; #=GS K7GZB4/73-171_280-304 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; #=GS K7GZB3/73-171_280-316 AC K7GZB3 #=GS K7GZB3/73-171_280-316 OS Caenorhabditis japonica #=GS K7GZB3/73-171_280-316 DE Uncharacterized protein #=GS K7GZB3/73-171_280-316 DR GENE3D; 2a24b41ec716e44a082876b7b10a4204/73-171_280-316; #=GS K7GZB3/73-171_280-316 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; #=GS A0A090LGJ4/331-429_571-606 AC A0A090LGJ4 #=GS A0A090LGJ4/331-429_571-606 OS Strongyloides ratti #=GS A0A090LGJ4/331-429_571-606 DE Uncharacterized protein #=GS A0A090LGJ4/331-429_571-606 DR GENE3D; cb3da79f45bf0abf4d55cbb9356b8042/331-429_571-606; #=GS A0A090LGJ4/331-429_571-606 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Panagrolaimoidea; Strongyloididae; Strongyloides; Strongyloides ratti; #=GS U6PWR1/249-347_451-487 AC U6PWR1 #=GS U6PWR1/249-347_451-487 OS Haemonchus contortus #=GS U6PWR1/249-347_451-487 DE Uncharacterized protein #=GS U6PWR1/249-347_451-487 DR GENE3D; 95e6672efd07f6aecbd94a7323d0d950/249-347_451-487; #=GS U6PWR1/249-347_451-487 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Trichostrongyloidea; Haemonchidae; Haemonchinae; Haemonchus; Haemonchus contortus; #=GS U6P2Y2/233-332_435-478 AC U6P2Y2 #=GS U6P2Y2/233-332_435-478 OS Haemonchus contortus #=GS U6P2Y2/233-332_435-478 DE Neurotransmitter-gated ion-channel ligand-binding and Neurotransmitter-gated ion-channel transmembrane region domain containing protein #=GS U6P2Y2/233-332_435-478 DR GENE3D; de385fd19946a171570bcb784b655551/233-332_435-478; #=GS U6P2Y2/233-332_435-478 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Trichostrongyloidea; Haemonchidae; Haemonchinae; Haemonchus; Haemonchus contortus; #=GS E3N1R2/250-350_463-495 AC E3N1R2 #=GS E3N1R2/250-350_463-495 OS Caenorhabditis remanei #=GS E3N1R2/250-350_463-495 DE CRE-MOD-1 protein #=GS E3N1R2/250-350_463-495 DR GENE3D; a19cffd54a307cebb127ddd94c465482/250-350_463-495; #=GS E3N1R2/250-350_463-495 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; #=GS A0A016V3S4/246-344_445-482 AC A0A016V3S4 #=GS A0A016V3S4/246-344_445-482 OS Ancylostoma ceylanicum #=GS A0A016V3S4/246-344_445-482 DE Uncharacterized protein #=GS A0A016V3S4/246-344_445-482 DR GENE3D; d6dfdb0f6b7f5ea9da2f7690ce372b09/246-344_445-482; #=GS A0A016V3S4/246-344_445-482 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma ceylanicum; #=GS A0A0B2VZS1/325-423_533-569 AC A0A0B2VZS1 #=GS A0A0B2VZS1/325-423_533-569 OS Toxocara canis #=GS A0A0B2VZS1/325-423_533-569 DE Ligand-gated ion channel 50 #=GS A0A0B2VZS1/325-423_533-569 DR GENE3D; ad6dc0f5244da7e95a9945937270fa41/325-423_533-569; #=GS A0A0B2VZS1/325-423_533-569 DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Ascaridida; Ascaridoidea; Toxocaridae; Toxocara; Toxocara canis; #=GF TC 220.2 1.1E-68 #=GF SQ 20 Q9GQ00/237-337_450-489 RRYGFYIIQAYVPTYLTIIVSWVSFCMEPKALPARTTVGISSLLALTFQFGNILKNLPRVSYVKAMDVWMLGCISFVFGTMVELAFVCYISRCQNSVRNAERFHPEAVDKFSIVA-------------------FPLAF---TMFNLV--YWWHYLSQTFDQNYQ-------- H2L0B8/237-357 RRYGFYIIQAYVPTYLTIIVSWVSFCMEPKALPARTTVGISSLLALTFQFGNILKNLPRVSYVKAMDVWMLGCISFVFGTMVELAFVCYISRCQNSVRNAER-RRERMRNSQVWANGSCRTR--------------------------------------------------- Q8MPU3/237-337_436-475 RRYGFYIIQAYVPTYLTIIVSWVSFCMEPKALPARTTVGISSLLALTFQFGNILKNLPRVSYVKAMDVWMLGCISFVFGTMVELAFVCYISRCQNSVRNAERFHPEAVDKFSIVA-------------------FPLAF---TMFNLV--YWWHYLSQTFDQNYQ-------- P41849/235-333_454-490 RRYGFYLFQSYFPTSLTVISSWVGFFFDVRSVSARITLGVSSLLALTFQFGNVLRHLPRVSYIKCLDVWMIFSVIFIFCTLVELAIVCQLNRWERERQIT--ITSVQVDRCSMIM-------------------FPLSF---LIFNVV--YWSIYFMKMDRP----------- A0A183FQA6/225-394 RRYGFYIIQAYVPTYLTIIVSWVSFCMEPKALPARTTVGISSLLALTFQFGNILKNLPRVSYVKAMDVWMLGCISFVFGTMVELAFVCYISRCQNSVRSAER-RKDRVRTSQVWTNGSCRSRAGQNNSNGNGVLFIYLFAENSTHEMV--YLSNGHSKLGEKNHEEKIERIST A8X863/203-301_411-447 RRYGFYLFQSYFPTSLTVISSWVGFFFDVRSVSARITLGVSSLLALTFQFGNVLRHLPRVSYIKCLDVWMIFSVIFIFCTLVELAIVCQLNRWERERQIT--ITSVQVDRCSMIM-------------------FPLSF---LIFNVV--YWSIYFMKMDRP----------- E3N6Q0/234-332_445-481 RRYGFYLFQSYFPTSLTVISSWVGFFFDVRSVSARITLGVSSLLALTFQFGNVLRHLPRVSYIKCLDVWMIFSVIFIFCTLVELAIVCQLNRWERERQIT--ITSVQVDRCSMIM-------------------FPLSF---LIFNVV--YWSIYFMKMDRP----------- A8XUW2/238-338_451-490 RRYGFYIIQAYVPTYLTIIVSWVSFCMEPKALPARTTVGISSLLALTFQFGNILKNLPRVSYVKAMDVWMLGCISFVFGTMVELAFVCYISRCQNSVRNAERFHPEAVDKFSIVA-------------------FPLAF---TMFNLV--YWWHYLSQTFDQNYQ-------- A0A016V2Y4/246-344_445-481 RRYGFYLFQSYFPTSLTVISSWVGFFFDVRSVSARITLGVSSLLALTFQFGNVLRHLPRVSYIKCLDVWMIFSVIFIFCTLVELAIVCQLNRWERERQIT--ITSVQVDRCSMIM-------------------FPLSF---LIFNIV--YWSIYFMKMDRP----------- M9MR50/233-332_435-463 RRYGFYIIQAYVPTYLTIIVSWVSFCMEPKALPARTTVGISSLLALTFQFGNILKNLPRVSYVKAMDVWMLGCISFVFGTMVELAFVCYISRCQNSVRSA-RFHPEAVDKFSIVA-------------------FPLAF---TFFNV------------RNYIV--------- G0MG09/238-336_461-497 RRYGFYLFQSYFPTSLTVISSWVGFFFDVRSVSARITLGVSSLLALTFQFGNVLRHLPRVSYIKCLDVWMIFSVIFIFCTLVELAIVCQLNRWERERQIT--ITSVQVDRCSMIM-------------------FPLSF---LIFNVV--YWSIYFMKMDRP----------- A0A016U5M1/232-331_430-471 RRYGFYIIQAYVPTYLTIIVSWVSFCMEPKALPARTTVGISSLLALTFQFGNILKNLPRVSYVKAMDVWMLGCISFVFGTMVELAFVCYISRCQNSVRSA-RFHPEAVDKFSIVA-------------------FPLAF---TLFNLV--YWWHYLSQTFDYKVSQ----I-- K7GZB4/73-171_280-304 RRYGFYLFQSYFPTSLTVISSWVGFFFDVRSVSARITLGVSSLLALTFQFGNVLRHLPRVSYIKCLDVWMIFSVIFIFCTLVELAIVCQLNRWERERQIT--ITSVQVDRCSMIM-------------------FPLSF---LIFNVV------------------------- K7GZB3/73-171_280-316 RRYGFYLFQSYFPTSLTVISSWVGFFFDVRSVSARITLGVSSLLALTFQFGNVLRHLPRVSYIKCLDVWMIFSVIFIFCTLVELAIVCQLNRWERERQIT--ITSVQVDRCSMIM-------------------FPLSF---LIFNVV--YWSIYFMKMDRP----------- A0A090LGJ4/331-429_571-606 RRYGFYLFQSYFPTSLTVISSWVGFFFDVRSVSARITLGVSSLLALTFQFGNVLRHLPRVSYIKCLDVWMIFSVIFIFCTLVELAIVCQLNRWERERQIT--ITSVQVDRISMIM-------------------FPLSF---LVFNII--YWLVYFSKMDR------------ U6PWR1/249-347_451-487 RRYGFYLFQSYFPTSLTVISSWVGFFFDVRSVSARITLGVSSLLALTFQFGNVLRHLPRVSYIKCLDVWMIFSVIFIFCTLVELAIVCQLNRWERERQIT--ITSVQVDRCSMIM-------------------FPLSF---LVFNIV--YWSIYFAKMDRP----------- U6P2Y2/233-332_435-478 RRYGFYIIQAYVPTYLTIIVSWVSFCMEPKALPARTTVGISSLLALTFQFGNILKNLPRVSYVKAMDVWMLGCISFVFGTMVELAFVCYISRCQNSVRSA-RFHPEAVDKFSIVA-------------------FPLAF---TFFNLI--YWWHYLSQTFDYKVQQ----VSS E3N1R2/250-350_463-495 RRYGFYIIQAYVPTYLTIIVSWVSFCMEPKALPARTTVGISSLLALTFQFGNILKNLPRVSYVKAMDVWMLGCISFVFGTMVELAFVCYISRCQNSVRNAERFHPEAVDKFSIVA-------------------FPLAF---TMFNVS--F------VTIKKLK--------- A0A016V3S4/246-344_445-482 RRYGFYLFQSYFPTSLTVISSWVGFFFDVRSVSARITLGVSSLLALTFQFGNVLRHLPRVSYIKCLDVWMIFSVIFIFCTLVELAIVCQLNRWERERQIT--ITSVQVDRCSMIM-------------------FPLSF---LIFNIVSHFRGYFFGKLED------------ A0A0B2VZS1/325-423_533-569 RRYGFYLFQSYFPTSLTVISSWVGFFFDVRSVSARITLGVSSLLALTFQFGNVLRHLPRVSYIKCLDVWMIFSVIFIFCTLVELAIVCQLNRWERERQIT--ITSVQVDRCSMIM-------------------FPLSF---LVFNIT--YWSIYFMKMDRP----------- #=GC scorecons 99999965969599599795999695575766699696979999999999997976999999795699996467597959699995995669665546461244444875476550000000000000000000766470004466450053223323323200000000000 #=GC scorecons_70 *******_*_*_**_****_***_*__*_*_*_**_*******************_********_******__*_***_******_**_*_*_*___*_*_______**__*______________________***_*_____**___________________________ #=GC scorecons_80 ******__*_*_**_**_*_***_*________**_*_*_************_*__******_*__****_____*_*_*_****_**___*_______________*__________________________*___*__________________________________ #=GC scorecons_90 ******__*_*_**_**_*_***_*________**_*_*_************_*__******_*__****_____*_*_*_****_**___*_______________*_________________________________________________________________ //