# STOCKHOLM 1.0
#=GF ID 1.10.8.10/FF/15209
#=GF DE RNA polymerase II degradation factor 1
#=GF AC 1.10.8.10/FF/15209
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 57.348
#=GS C5M2B8/18-66      AC C5M2B8
#=GS C5M2B8/18-66      OS Candida tropicalis MYA-3404
#=GS C5M2B8/18-66      DE RNA polymerase II degradation factor 1
#=GS C5M2B8/18-66      DR GENE3D; 00570c4c2775bf049e3e14944ae07566/18-66; 
#=GS C5M2B8/18-66      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida tropicalis; 
#=GS A0A0V1PV34/20-69  AC A0A0V1PV34
#=GS A0A0V1PV34/20-69  OS Debaryomyces fabryi
#=GS A0A0V1PV34/20-69  DE Uncharacterized protein
#=GS A0A0V1PV34/20-69  DR GENE3D; 355006f696fbaee06f4b119e05cf35f4/20-69; 
#=GS A0A0V1PV34/20-69  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Debaryomyces; Debaryomyces fabryi; 
#=GS A0A1D8PLC5/18-65  AC A0A1D8PLC5
#=GS A0A1D8PLC5/18-65  OS Candida albicans SC5314
#=GS A0A1D8PLC5/18-65  DE DNA damage-responsive RNA polymerase-degradation factor
#=GS A0A1D8PLC5/18-65  DR GENE3D; 493ceb2d30a4c4a37efd4b6acbb27ee1/18-65; 
#=GS A0A1D8PLC5/18-65  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida albicans; 
#=GS M3K0T6/21-68      AC M3K0T6
#=GS M3K0T6/21-68      OS Candida maltosa Xu316
#=GS M3K0T6/21-68      DE Uncharacterized protein
#=GS M3K0T6/21-68      DR GENE3D; 76733ac3e23875e53491c02df3d6ceb5/21-68; 
#=GS M3K0T6/21-68      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida maltosa; 
#=GS Q5AMM4/18-65      AC Q5AMM4
#=GS Q5AMM4/18-65      OS Candida albicans SC5314
#=GS Q5AMM4/18-65      DE RNA polymerase II degradation factor 1
#=GS Q5AMM4/18-65      DR GENE3D; 7fed86ff7078fc43e25f52e21bf2569a/18-65; 
#=GS Q5AMM4/18-65      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida albicans; 
#=GS A5E406/17-72      AC A5E406
#=GS A5E406/17-72      OS Lodderomyces elongisporus NRRL YB-4239
#=GS A5E406/17-72      DE RNA polymerase II degradation factor 1
#=GS A5E406/17-72      DR GENE3D; 8e886856aa4f94379fca9b0f3480eb8a/17-72; 
#=GS A5E406/17-72      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Lodderomyces; Lodderomyces elongisporus; 
#=GS C4YHS3/18-65      AC C4YHS3
#=GS C4YHS3/18-65      OS Candida albicans WO-1
#=GS C4YHS3/18-65      DE RNA polymerase II degradation factor 1
#=GS C4YHS3/18-65      DR GENE3D; b92a696f2db78a542a7f312fbbcc1b1a/18-65; 
#=GS C4YHS3/18-65      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida albicans; 
#=GS B9WFM3/18-65      AC B9WFM3
#=GS B9WFM3/18-65      OS Candida dubliniensis CD36
#=GS B9WFM3/18-65      DE Uncharacterized protein
#=GS B9WFM3/18-65      DR GENE3D; d3868d29730dd0e0470c91c37fa64031/18-65; 
#=GS B9WFM3/18-65      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida dubliniensis; 
#=GS H8X6V8/17-63      AC H8X6V8
#=GS H8X6V8/17-63      OS Candida orthopsilosis Co 90-125
#=GS H8X6V8/17-63      DE Uncharacterized protein
#=GS H8X6V8/17-63      DR GENE3D; d7a4f2beaf4a2dc2035113c91f324c9a/17-63; 
#=GS H8X6V8/17-63      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida orthopsilosis; 
#=GS G3ASY4/17-62      AC G3ASY4
#=GS G3ASY4/17-62      OS Spathaspora passalidarum NRRL Y-27907
#=GS G3ASY4/17-62      DE Putative uncharacterized protein
#=GS G3ASY4/17-62      DR GENE3D; ce9a2b07d73fd85a6c4c85c799839370/17-62; 
#=GS G3ASY4/17-62      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Spathaspora; Spathaspora passalidarum; 
#=GF TC 97.8 2.1E-31
#=GF SQ 10
C5M2B8/18-66              -------SHSNSSSTSVELTNLVEMFPDWEADELQGLLSENDNSLEIVIDLIVNNK---
A0A0V1PV34/20-69          ------SSSSNNNSSSTELTSLLEMFPDWEADDLSSLLSEHNNILEVVIDLIVNNK---
A0A1D8PLC5/18-65          --------GNNSNSTSTELTNLVEMFPDWEADELQGLLSENDNSLEIVIDLIVNNK---
M3K0T6/21-68              -----------NTTSSAELSNLVEMFPDWEADELQGLLFENDNSLEIVIDLIVNNKVSK
Q5AMM4/18-65              --------GNNSNSTSTELTNLVEMFPDWEADELQGLLSENDNSLEIVIDLIVNNK---
A5E406/17-72              NNETSGSTNSTNSNASPELTSLTEMFPDWESDELNSLLQEKRNSLEVVIDLIVNNK---
C4YHS3/18-65              --------GNNSNSTSTELTNLVEMFPDWEADELQGLLSENDNSLEIVIDLIVNNK---
B9WFM3/18-65              --------GNNSNSTSTELTNLVEMFPDWEADELQGLLSENDNSLEIVIDLIVNNK---
H8X6V8/17-63              ----------GNNSTSPELTSLVEMFPDWESDELSGLLEENDNALEIVIDLIVNNKV--
G3ASY4/17-62              ------------NTPSIELTNLLEMFPDWESEDLQSLLQEHDNSLEVVIDLIVNNKVS-
#=GC scorecons            00000000123455494997695999999968795699395696997999999999000
#=GC scorecons_70         _______________*_***_*_*******_***__**_*__**************___
#=GC scorecons_80         _______________*_***_*_*******_***__**_*__*_**_*********___
#=GC scorecons_90         _______________*_**__*_*******___*__**_*__*_**_*********___
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