# STOCKHOLM 1.0
#=GF ID 1.10.601.10/FF/262
#=GF DE RNA polymerase sigma factor
#=GF AC 1.10.601.10/FF/262
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 37.424
#=GS A0A0K2DST7/83-277   AC A0A0K2DST7
#=GS A0A0K2DST7/83-277   OS Xanthomonas gardneri
#=GS A0A0K2DST7/83-277   DE RNA polymerase sigma factor
#=GS A0A0K2DST7/83-277   DR GENE3D; 02ca56f7ecc633cd5ba929722ab6f095/83-277; 
#=GS A0A0K2DST7/83-277   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas gardneri; 
#=GS A0A0K2DST7/83-277   DR EC; 2.7.7.6; 
#=GS A0A0K2DSX6/84-285   AC A0A0K2DSX6
#=GS A0A0K2DSX6/84-285   OS Xanthomonas gardneri
#=GS A0A0K2DSX6/84-285   DE RNA polymerase sigma factor
#=GS A0A0K2DSX6/84-285   DR GENE3D; b6875c9d02124d7a9df53265d495687e/84-285; 
#=GS A0A0K2DSX6/84-285   DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas gardneri; 
#=GS A0A0K2DSX6/84-285   DR EC; 2.7.7.6; 
#=GS Q8P4H2/119-458      AC Q8P4H2
#=GS Q8P4H2/119-458      OS Xanthomonas campestris pv. campestris str. ATCC 33913
#=GS Q8P4H2/119-458      DE RNA polymerase sigma factor RpoD
#=GS Q8P4H2/119-458      DR GENE3D; 2822bca9a9bebadc54593c59debcad16/119-458; 
#=GS Q8P4H2/119-458      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas campestris; 
#=GS U5N5X8/93-290       AC U5N5X8
#=GS U5N5X8/93-290       OS Xanthomonas maliensis
#=GS U5N5X8/93-290       DE RNA polymerase sigma factor
#=GS U5N5X8/93-290       DR GENE3D; 2013f191afa8fc0bc3068956a119a37a/93-290; 
#=GS U5N5X8/93-290       DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas maliensis; 
#=GS A0A0H2XBP7/119-458  AC A0A0H2XBP7
#=GS A0A0H2XBP7/119-458  OS Xanthomonas campestris pv. campestris str. 8004
#=GS A0A0H2XBP7/119-458  DE RNA polymerase sigma factor RpoD
#=GS A0A0H2XBP7/119-458  DR GENE3D; 2822bca9a9bebadc54593c59debcad16/119-458; 
#=GS A0A0H2XBP7/119-458  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas campestris; 
#=GS C8YLJ0/21-261       AC C8YLJ0
#=GS C8YLJ0/21-261       OS Xanthomonas phaseoli pv. phaseoli
#=GS C8YLJ0/21-261       DE RpoD
#=GS C8YLJ0/21-261       DR GENE3D; 6461f79cf23539bc14c1cd25a4eedea5/21-261; 
#=GS C8YLJ0/21-261       DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas phaseoli; 
#=GS C8YLL1/21-261       AC C8YLL1
#=GS C8YLL1/21-261       OS Xanthomonas perforans
#=GS C8YLL1/21-261       DE RpoD
#=GS C8YLL1/21-261       DR GENE3D; 6461f79cf23539bc14c1cd25a4eedea5/21-261; 
#=GS C8YLL1/21-261       DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas perforans; 
#=GS A0A0K0PSM1/106-312  AC A0A0K0PSM1
#=GS A0A0K0PSM1/106-312  OS Xanthomonas campestris pv. campestris
#=GS A0A0K0PSM1/106-312  DE RNA polymerase sigma factor
#=GS A0A0K0PSM1/106-312  DR GENE3D; 70c3623e53653afcc39339c2cd7c0581/106-312; 
#=GS A0A0K0PSM1/106-312  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas campestris; 
#=GS D6CHL7/1-199        AC D6CHL7
#=GS D6CHL7/1-199        OS Xanthomonas arboricola pv. juglandis
#=GS D6CHL7/1-199        DE RNA polymerase sigma subunit
#=GS D6CHL7/1-199        DR GENE3D; a9dc0f107e5c4c137c65365eed42d00a/1-199; 
#=GS D6CHL7/1-199        DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas arboricola; 
#=GS A0A0H3UYS7/8-203    AC A0A0H3UYS7
#=GS A0A0H3UYS7/8-203    OS Xanthomonas arboricola
#=GS A0A0H3UYS7/8-203    DE RNA polymerase sigma factor
#=GS A0A0H3UYS7/8-203    DR GENE3D; c40e391abad1df15cdeeb6e53c420bfc/8-203; 
#=GS A0A0H3UYS7/8-203    DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas arboricola; 
#=GS A0A0B4ZWR9/1-240    AC A0A0B4ZWR9
#=GS A0A0B4ZWR9/1-240    OS Xanthomonas campestris pv. campestris
#=GS A0A0B4ZWR9/1-240    DE RNA polymerase sigma factor
#=GS A0A0B4ZWR9/1-240    DR GENE3D; ce669aa66deae99b8e523001011b3302/1-240; 
#=GS A0A0B4ZWR9/1-240    DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas campestris; 
#=GS Q5H5B8/124-463      AC Q5H5B8
#=GS Q5H5B8/124-463      OS Xanthomonas oryzae pv. oryzae KACC 10331
#=GS Q5H5B8/124-463      DE RNA polymerase sigma factor RpoD
#=GS Q5H5B8/124-463      DR GENE3D; f4d68b15114c64295b1ce8dd23dce8c9/124-463; 
#=GS Q5H5B8/124-463      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas oryzae; 
#=GF TC 451.7 2.0E-139
#=GF SQ 12
A0A0K2DST7/83-277           LTREGEIAIAKRIEEGLSQVQAALGVFPLSTEMLLADYEAHKEGKKRLAEIVVGFNDLIEEADAAAAALAAAG-PVAVSEDDAADDDDAEDGDDDA-AEEEAGPTGPDPVEVATRMENLANEYAKFKKIYAKNGAEHKLVVKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLHLATAVARMPRKDF--------------------------------------------------------------------------------------------------------------------------------------------------
A0A0K2DSX6/84-285           LTREGEIAIAKRIEEGLSQVQAALGVFPLSTEMLLADYEAHKEGKKRLAEIVVGFNDLIEEADAAAAALAAAG-PVAVSEDDAADDDDAEDGDDDA-AEEEAGPTGPDPVEVATRMENLANEYAKFKKIYAKNGAEHKLVVKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLHLATAVARMPRKDFIRSWEAR-------------------------------------------------------------------------------------------------------------------------------------------
Q8P4H2/119-458              LTREGEIAIAKRIEEGLSQVQAALGTFPLSTELLLSDYEAHKEGKKRLAEIVVGFNDLIEEADAAAAALAAAG-PVAV-DEDAVDEDADEDGDDDA-AEEEAGPTGPDPVEVATRMENLANEYAKFKKAYVKYGAEHKNVAKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLHLATTVARMPRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALRDVKDQIVSEQQGSIEMEKANYLTLAEIKDISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR
U5N5X8/93-290               LTREGEIAIAKRIEEGLGQVQAALGIFPLSTEMLLADYEAHKDGKKRLAEIVVGFNDLIEEADAAAAALAEAGETAAV-DGD--DVDDDEDGDDEASSEEDAGPTGPDPVEVATRMENLANEYAKFKKAYVKYGAEHKNVVKAREDMAAIFTTLKLPLPLTDALVTQLREVVNGIKDHERKVLHLATTIARMPRKDFIRSW----------------------------------------------------------------------------------------------------------------------------------------------
A0A0H2XBP7/119-458          LTREGEIAIAKRIEEGLSQVQAALGTFPLSTELLLSDYEAHKEGKKRLAEIVVGFNDLIEEADAAAAALAAAG-PVAV-DEDAVDEDADEDGDDDA-AEEEAGPTGPDPVEVATRMENLANEYAKFKKAYVKYGAEHKNVAKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLHLATTVARMPRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALRDVKDQIVSEQQGSIEMEKANYLTLAEIKDISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR
C8YLJ0/21-261               LTREGEIAIAKRIEEGLSQVQAALGVFPLSTEMLLADYEAHKEGKKRLAEIVVGFNDLIEEADAAAAALAAAG-PVAVSDDEAVDEDDDEDGDDEA-AEEEAGPTGPDPVEVATRMENLANEYAKFKKAYAKNGAEHKLVVKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLHLATTVARMPRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALRDVXDQIISEQQGSIEME----------------------------------------------------------------------------------------------------
C8YLL1/21-261               LTREGEIAIAKRIEEGLSQVQAALGVFPLSTEMLLADYEAHKEGKKRLAEIVVGFNDLIEEADAAAAALAAAG-PVAVSDDEAVDEDDDEDGDDEA-AEEEAGPTGPDPVEVATRMENLANEYAKFKKAYAKNGAEHKLVVKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLHLATTVARMPRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALRDVXDQIISEQQGSIEME----------------------------------------------------------------------------------------------------
A0A0K0PSM1/106-312          LTREVEIAIAKRIEEGLSQVHPALGVFSLSTELLLAAYEAHKEGKKRLAEIVVGFNDLLEEADAAAAALAAAG-PVAV-DEDAVDEDDDEDGDDDA-AEEEAGPTGPDSVEVATCMENLANEYAKFKKIYAKNGAEHKLVVKAREDMAAIFPTLKLPLPLTDALVTQLRGVVNGIKDHERKVLHLVTTVARMPRKDFIRSWEGNQTNLEW-------------------------------------------------------------------------------------------------------------------------------------
D6CHL7/1-199                --REGEIAIAKRIEEGLSQVQAALGVFPLSTEMLLADYEAHKEGKKRLAEIVVGFNDLIEEADAAAAALAAAG-PVAV-DEDAVDEDDDEDGDDDA-AEEEAGPTGPDPVEVATRMENLANEYAKFKKIYAKNGAEHKLVVKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLHLATTVARMPRKDFIRSWEGY-------------------------------------------------------------------------------------------------------------------------------------------
A0A0H3UYS7/8-203            LTREGEIAIAKRIEEGLSQVQAALGVFPLSTEMLLADYEAHKEGKKRLAEIVVGFNDLIEEADAAAAALAAAG-PVAV-DEDAADEDDDEDGDDDA-AEEEAGPTGPDPVEVATRMENLANEYAKFKKVYAKNGAEHKLVVKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLHLATTVARMPRKDFIR------------------------------------------------------------------------------------------------------------------------------------------------
A0A0B4ZWR9/1-240            ---------------------AALGTFPLSTELLLSDYEAHKEGKKRLAEIVVGFNDLIEEADAAAAALAAAG-PVAV-DEDAVDEDADEDGDDDA-AEEEAGPTGPDPVEVATRMENLANEYAKFKKAYVKYGAEHKNVAKAREDMAAIFTTLKLPLPLTDALVTQLRGVVTGIKDHERKVLHLATTVARMPRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALRDVKDQIVSEQQGSIEMEKANYLTLAEIKDISRAMAYGE-------------------------------------------------------------------------------
Q5H5B8/124-463              LTREGEIAIAKRIEEGLSQVQAALGVFPLSTEMLLADYEAHKEGKKRLAEIVVGFNDLIEEADAAAAALAAAG-PVAV-DEDALDEDDDEDGDDAA-AEEEVGPTGPDPVEVATRMQNLANEYAKFKKVYAKNGAEHKLVVKAREDMAAIFTTLKLPLPLTDALVTQLRGVVNGIKDHERKVLHLATTVARMPRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALRDVKDQIISEQQGSMEMEKASYLTLGEIKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR
#=GC scorecons              6677677777777777767768999598999969968999998999999999999999899999999999799088990868759695799999690899879999998999998979999999999959695999994969999999999899999999999999999899799999999999989789999999977665433333332222222222222222221222122222222221101111011111111111110000000000000000000000000000000000000000000000000000000000000000000000000000000
#=GC scorecons_70           __**_********************_***********************************************_****_****_***_********_*******************************_*_*_*****_**************************************************************______________________________________________________________________________________________________________________________________________
#=GC scorecons_80           _____________________****_******_**_*************************************_****_*_**_*_*_******_*_*******************************_*_*_*****_*_**********************************************************________________________________________________________________________________________________________________________________________________
#=GC scorecons_90           _____________________****_******_**__*********************************_**_****______*_*__*****_*_****_************_*_***********_*_*_*****_*_*******************************_**************_*********__________________________________________________________________________________________________________________________________________________
//