# STOCKHOLM 1.0
#=GF ID 1.10.601.10/FF/1153
#=GF DE RNA polymerase sigma factor RpoD
#=GF AC 1.10.601.10/FF/1153
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 0.000
#=GS O83506/116-449      AC O83506
#=GS O83506/116-449      OS Treponema pallidum subsp. pallidum str. Nichols
#=GS O83506/116-449      DE RNA polymerase sigma factor RpoD
#=GS O83506/116-449      DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/116-449; 
#=GS O83506/116-449      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; 
#=GS R9UT89/116-449      AC R9UT89
#=GS R9UT89/116-449      OS Treponema pallidum subsp. pallidum str. Nichols
#=GS R9UT89/116-449      DE RNA polymerase sigma factor RpoD
#=GS R9UT89/116-449      DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/116-449; 
#=GS R9UT89/116-449      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; 
#=GS H6KTV1/116-449      AC H6KTV1
#=GS H6KTV1/116-449      OS Treponema pallidum subsp. pertenue str. CDC2
#=GS H6KTV1/116-449      DE RNA polymerase sigma factor RpoD
#=GS H6KTV1/116-449      DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/116-449; 
#=GS H6KTV1/116-449      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pertenue; 
#=GS A0A1L7DEN9/116-449  AC A0A1L7DEN9
#=GS A0A1L7DEN9/116-449  OS Treponema pallidum subsp. pallidum
#=GS A0A1L7DEN9/116-449  DE RNA polymerase sigma factor RpoD
#=GS A0A1L7DEN9/116-449  DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/116-449; 
#=GS A0A1L7DEN9/116-449  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; 
#=GS A0A0H3BJ10/116-449  AC A0A0H3BJ10
#=GS A0A0H3BJ10/116-449  OS Treponema pallidum subsp. pallidum SS14
#=GS A0A0H3BJ10/116-449  DE RNA polymerase sigma factor RpoD
#=GS A0A0H3BJ10/116-449  DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/116-449; 
#=GS A0A0H3BJ10/116-449  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; 
#=GS A0A0A7X4T0/116-449  AC A0A0A7X4T0
#=GS A0A0A7X4T0/116-449  OS Treponema pallidum subsp. endemicum str. Bosnia A
#=GS A0A0A7X4T0/116-449  DE RNA polymerase sigma factor RpoD
#=GS A0A0A7X4T0/116-449  DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/116-449; 
#=GS A0A0A7X4T0/116-449  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. endemicum; 
#=GF TC 782.7 1.7E-240
#=GF SQ 6
O83506/116-449              LDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLLLPEFYHIGRSLSKKALAVLDPAESGRTRKEISEEMADRRRLKQAYGEVLRSLYPEMRHYMAMKKRLDERGEPVTVLSSDEEVCKQRDKLLSCLQKVDLQLEEIDRFSRKFLDTARKIREYKRRKDRHEKQLMIADLCDMRKIGRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIR
R9UT89/116-449              LDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLLLPEFYHIGRSLSKKALAVLDPAESGRTRKEISEEMADRRRLKQAYGEVLRSLYPEMRHYMAMKKRLDERGEPVTVLSSDEEVCKQRDKLLSCLQKVDLQLEEIDRFSRKFLDTARKIREYKRRKDRHEKQLMIADLCDMRKIGRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIR
H6KTV1/116-449              LDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLLLPEFYHIGRSLSKKALAVLDPAESGRTRKEISEEMADRRRLKQAYGEVLRSLYPEMRHYMAMKKRLDERGEPVTVLSSDEEVCKQRDKLLSCLQKVDLQLEEIDRFSRKFLDTARKIREYKRRKDRHEKQLMIADLCDMRKIGRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIR
A0A1L7DEN9/116-449          LDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLLLPEFYHIGRSLSKKALAVLDPAESGRTRKEISEEMADRRRLKQAYGEVLRSLYPEMRHYMAMKKRLDERGEPVTVLSSDEEVCKQRDKLLSCLQKVDLQLEEIDRFSRKFLDTARKIREYKRRKDRHEKQLMIADLCDMRKIGRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIR
A0A0H3BJ10/116-449          LDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLLLPEFYHIGRSLSKKALAVLDPAESGRTRKEISEEMADRRRLKQAYGEVLRSLYPEMRHYMAMKKRLDERGEPVTVLSSDEEVCKQRDKLLSCLQKVDLQLEEIDRFSRKFLDTARKIREYKRRKDRHEKQLMIADLCDMRKIGRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIR
A0A0A7X4T0/116-449          LDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLLLPEFYHIGRSLSKKALAVLDPAESGRTRKEISEEMADRRRLKQAYGEVLRSLYPEMRHYMAMKKRLDERGEPVTVLSSDEEVCKQRDKLLSCLQKVDLQLEEIDRFSRKFLDTARKIREYKRRKDRHEKQLMIADLCDMRKIGRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIR
#=GC scorecons              0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
#=GC scorecons_70           ______________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
#=GC scorecons_80           ______________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
#=GC scorecons_90           ______________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
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