# STOCKHOLM 1.0 #=GF ID 1.10.601.10/FF/1153 #=GF DE RNA polymerase sigma factor RpoD #=GF AC 1.10.601.10/FF/1153 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 0.000 #=GS O83506/116-449 AC O83506 #=GS O83506/116-449 OS Treponema pallidum subsp. pallidum str. Nichols #=GS O83506/116-449 DE RNA polymerase sigma factor RpoD #=GS O83506/116-449 DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/116-449; #=GS O83506/116-449 DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; #=GS R9UT89/116-449 AC R9UT89 #=GS R9UT89/116-449 OS Treponema pallidum subsp. pallidum str. Nichols #=GS R9UT89/116-449 DE RNA polymerase sigma factor RpoD #=GS R9UT89/116-449 DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/116-449; #=GS R9UT89/116-449 DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; #=GS H6KTV1/116-449 AC H6KTV1 #=GS H6KTV1/116-449 OS Treponema pallidum subsp. pertenue str. CDC2 #=GS H6KTV1/116-449 DE RNA polymerase sigma factor RpoD #=GS H6KTV1/116-449 DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/116-449; #=GS H6KTV1/116-449 DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pertenue; #=GS A0A1L7DEN9/116-449 AC A0A1L7DEN9 #=GS A0A1L7DEN9/116-449 OS Treponema pallidum subsp. pallidum #=GS A0A1L7DEN9/116-449 DE RNA polymerase sigma factor RpoD #=GS A0A1L7DEN9/116-449 DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/116-449; #=GS A0A1L7DEN9/116-449 DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; #=GS A0A0H3BJ10/116-449 AC A0A0H3BJ10 #=GS A0A0H3BJ10/116-449 OS Treponema pallidum subsp. pallidum SS14 #=GS A0A0H3BJ10/116-449 DE RNA polymerase sigma factor RpoD #=GS A0A0H3BJ10/116-449 DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/116-449; #=GS A0A0H3BJ10/116-449 DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; #=GS A0A0A7X4T0/116-449 AC A0A0A7X4T0 #=GS A0A0A7X4T0/116-449 OS Treponema pallidum subsp. endemicum str. Bosnia A #=GS A0A0A7X4T0/116-449 DE RNA polymerase sigma factor RpoD #=GS A0A0A7X4T0/116-449 DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/116-449; #=GS A0A0A7X4T0/116-449 DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. endemicum; #=GF TC 782.7 1.7E-240 #=GF SQ 6 O83506/116-449 LDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLLLPEFYHIGRSLSKKALAVLDPAESGRTRKEISEEMADRRRLKQAYGEVLRSLYPEMRHYMAMKKRLDERGEPVTVLSSDEEVCKQRDKLLSCLQKVDLQLEEIDRFSRKFLDTARKIREYKRRKDRHEKQLMIADLCDMRKIGRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIR R9UT89/116-449 LDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLLLPEFYHIGRSLSKKALAVLDPAESGRTRKEISEEMADRRRLKQAYGEVLRSLYPEMRHYMAMKKRLDERGEPVTVLSSDEEVCKQRDKLLSCLQKVDLQLEEIDRFSRKFLDTARKIREYKRRKDRHEKQLMIADLCDMRKIGRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIR H6KTV1/116-449 LDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLLLPEFYHIGRSLSKKALAVLDPAESGRTRKEISEEMADRRRLKQAYGEVLRSLYPEMRHYMAMKKRLDERGEPVTVLSSDEEVCKQRDKLLSCLQKVDLQLEEIDRFSRKFLDTARKIREYKRRKDRHEKQLMIADLCDMRKIGRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIR A0A1L7DEN9/116-449 LDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLLLPEFYHIGRSLSKKALAVLDPAESGRTRKEISEEMADRRRLKQAYGEVLRSLYPEMRHYMAMKKRLDERGEPVTVLSSDEEVCKQRDKLLSCLQKVDLQLEEIDRFSRKFLDTARKIREYKRRKDRHEKQLMIADLCDMRKIGRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIR A0A0H3BJ10/116-449 LDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLLLPEFYHIGRSLSKKALAVLDPAESGRTRKEISEEMADRRRLKQAYGEVLRSLYPEMRHYMAMKKRLDERGEPVTVLSSDEEVCKQRDKLLSCLQKVDLQLEEIDRFSRKFLDTARKIREYKRRKDRHEKQLMIADLCDMRKIGRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIR A0A0A7X4T0/116-449 LDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGEGIIKDIITQSGLLLPEFYHIGRSLSKKALAVLDPAESGRTRKEISEEMADRRRLKQAYGEVLRSLYPEMRHYMAMKKRLDERGEPVTVLSSDEEVCKQRDKLLSCLQKVDLQLEEIDRFSRKFLDTARKIREYKRRKDRHEKQLMIADLCDMRKIGRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFENTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIR #=GC scorecons 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 #=GC scorecons_70 ______________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ #=GC scorecons_80 ______________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ #=GC scorecons_90 ______________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ //