# STOCKHOLM 1.0
#=GF ID 1.10.601.10/FF/1000
#=GF DE RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
#=GF AC 1.10.601.10/FF/1000
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 7.380
#=GS Q9ZNX9/84-356      AC Q9ZNX9
#=GS Q9ZNX9/84-356      OS Arabidopsis thaliana
#=GS Q9ZNX9/84-356      DE RNA polymerase sigma factor sigE, chloroplastic/mitochondrial
#=GS Q9ZNX9/84-356      DR GENE3D; 4eece1dc946cc810cde640014f2df4f1/84-356; 
#=GS Q9ZNX9/84-356      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9ZNX9/84-356      DR GO; GO:0001053; GO:0005515; GO:0005739; GO:0006352; GO:0009507; GO:0009553; GO:0009658; GO:0010114; GO:0010207; GO:0010218; GO:0016987; GO:0045893; GO:0071483; GO:2001141; 
#=GS A0A178URC9/84-356  AC A0A178URC9
#=GS A0A178URC9/84-356  OS Arabidopsis thaliana
#=GS A0A178URC9/84-356  DE SIGE
#=GS A0A178URC9/84-356  DR GENE3D; 4eece1dc946cc810cde640014f2df4f1/84-356; 
#=GS A0A178URC9/84-356  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS D7M2H3/92-356      AC D7M2H3
#=GS D7M2H3/92-356      OS Arabidopsis lyrata subsp. lyrata
#=GS D7M2H3/92-356      DE Putative uncharacterized protein
#=GS D7M2H3/92-356      DR GENE3D; e1d6c5fbe5c2ad051f7de4fc3cab063d/92-356; 
#=GS D7M2H3/92-356      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GF TC 618.4 1.2E-190
#=GF SQ 3
Q9ZNX9/84-356              EHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVEDDVEDGGSKAKVSRRRKRKESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQEKPVVASVDKKVTKRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFT
A0A178URC9/84-356          EHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVEDDVEDGGSKAKVSRRRKRKESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQEKPVVASVDKKVTKRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFT
D7M2H3/92-356              --------SLGVDYYEAAARLESIYKLSPATTTLDEEDVEDGGSKAKVSPRRKRKQSGEEKKVVVRNNVMKEKRLSLDKRIALKRNVQEKPVVISAEKKVTKKQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDELQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHDFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFT
#=GC scorecons             111111119999993999999999999999999929699999999999939999959999999999999399995999999999999999999494699999699999999999999999999999999999999999999999999999999999999939999999999999999999999999999999999999999999999999999999969999999999999999999999999999999999999999999999999999999
#=GC scorecons_70          ________******_*******************_*_************_*****_*************_****_******************_*__*****_*********************************************************_********************************************************_*******************************************************
#=GC scorecons_80          ________******_*******************_*_************_*****_*************_****_******************_*__*****_*********************************************************_********************************************************_*******************************************************
#=GC scorecons_90          ________******_*******************_*_************_*****_*************_****_******************_*__*****_*********************************************************_********************************************************_*******************************************************
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