# STOCKHOLM 1.0
#=GF ID 1.10.565.10/FF/5168
#=GF DE Nuclear hormone receptor family member nhr-25
#=GF AC 1.10.565.10/FF/5168
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 72.859
#=GS Q19345/310-536      AC Q19345
#=GS Q19345/310-536      OS Caenorhabditis elegans
#=GS Q19345/310-536      DE Nuclear hormone receptor family member nhr-25
#=GS Q19345/310-536      DR GENE3D; b7fcd33e8c554a05b7acea35c3a4a148/310-536; 
#=GS Q19345/310-536      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q19345/310-536      DR GO; GO:0005515; GO:0005634; GO:0018996; GO:0045944; GO:0070016; 
#=GS Q9VI12/113-274      AC Q9VI12
#=GS Q9VI12/113-274      OS Drosophila melanogaster
#=GS Q9VI12/113-274      DE Hormone receptor 83
#=GS Q9VI12/113-274      DR GENE3D; d13172cde5aeb563f8d89ed6fce8c479/113-274; 
#=GS Q9VI12/113-274      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q9VI12/113-274      DR GO; GO:0000792; GO:0004879; GO:0005634; GO:0005730; 
#=GS A8XQ17/306-530      AC A8XQ17
#=GS A8XQ17/306-530      OS Caenorhabditis briggsae
#=GS A8XQ17/306-530      DE Protein CBR-NHR-25
#=GS A8XQ17/306-530      DR GENE3D; 239f4486319f9319684338c27ed72929/306-530; 
#=GS A8XQ17/306-530      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A1I7USC0/304-527  AC A0A1I7USC0
#=GS A0A1I7USC0/304-527  OS Caenorhabditis tropicalis
#=GS A0A1I7USC0/304-527  DE Uncharacterized protein
#=GS A0A1I7USC0/304-527  DR GENE3D; 3900424fd479d66d2c9974a35609e231/304-527; 
#=GS A0A1I7USC0/304-527  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS E3MVJ2/308-535      AC E3MVJ2
#=GS E3MVJ2/308-535      OS Caenorhabditis remanei
#=GS E3MVJ2/308-535      DE CRE-NHR-25 protein
#=GS E3MVJ2/308-535      DR GENE3D; 8386cea634280a4825ab50974b8bb57d/308-535; 
#=GS E3MVJ2/308-535      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS H2W6W3/309-531      AC H2W6W3
#=GS H2W6W3/309-531      OS Caenorhabditis japonica
#=GS H2W6W3/309-531      DE Uncharacterized protein
#=GS H2W6W3/309-531      DR GENE3D; d71daff847475224b22240b8ecc8c349/309-531; 
#=GS H2W6W3/309-531      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS G0MWZ9/346-511      AC G0MWZ9
#=GS G0MWZ9/346-511      OS Caenorhabditis brenneri
#=GS G0MWZ9/346-511      DE CBN-NHR-25 protein
#=GS G0MWZ9/346-511      DR GENE3D; eb49dc69fc3b72dd7fe0431e36a537ff/346-511; 
#=GS G0MWZ9/346-511      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GF TC 155.2 3.9E-49
#=GF SQ 7
Q19345/310-536              KTVDHFYNSSIAEMCKTLPDDAQIARIFTSVKGTSKPEKHAFSIQVAEENLKDIVIWAKNDQLFSKLSLDDQMILLQTSWTTVHIVDIT------NAMVHG------------------------------------NLLSQYKMSNGDEVPVGLVAL----LGNQTFVSSWNDVVIRLRNMGFTNFD---YCAFRFLALFDQSMDSFPAVSTARSRVLQSWREVRCT--TAFLEIFEQIRRLAYDSLRYLWNLHSNCPTNWEQFFPEASLVLEMIRT--
Q9VI12/113-274              ---------------------------------------QALHFQILAQILVTCLRQAKANEQFALLDRCQQDAIFQVVWSEIFVLRASHWSLDISAMIDGCGDEQLKRLICEAHQLRADVLELNFMESLILCRKELAINAEYAVILGSHSKAALISLARYTLQQSNYL-RFGQLLLGLRQLCLRRFDCALSCMFR-------------------------------------------------------------------------SVVRDI-----
A8XQ17/306-530              ---DHFYNSNMAEMCKTLPDDSQIIRIFNAAKG-MKGEAHSFAVTVADENLKVIVDWAKNNQLFGKLQLDDQMNLLQTSWSTVHLVDIT------NAMIHG------------------------------------NLSPTYKITTGEDVSVGAVAL----LGYRLYVNTWNDIVNRLRNMGFTKFD---YCAFRFLALFDQSMDHFQAVSAARSRVLQAWAEVRCSFVSGFMSIFEEIRRLSHDAVRYLWSLQSNFPELWASLRPDTSLVLEMIKT--
A0A1I7USC0/304-527          ----HFYNSTMAEMCKELPDGGMIAKFMADARS-SKHDSHAFAVQVAEENLKLIVAWAKKNNLFTKLTLDDQMNLLQTSWATVHIVDIT------NAMING------------------------------------HLSSHYKIANGEEVSAGFIAL----LGNSPFVPAWGDLVVRLQNMGFNKFD---YCAFRLMALFDQSMENYQVVSEARSRVLQAWSEVRCT--PRFLDLFEQLRQISYDSIRYLWSLSSSCPRIWEQLNPSTSLVLEMIKTSA
E3MVJ2/308-535              -TVDHFYNSSIAEMCKTLPDDTLIPRILSQTVKATKNDAHAFAVQVADENLKEIVTWAKQDQMFSKLNLDDQMNLLQTSWATVHIIDIT------NAMVLG------------------------------------TLHQQYKVGNGEEVSVGFIAL----LGNQNFVSSWNEIVMSLRNMGFNNFD---YCAFRYLALFDEGMELYPAVSAARLRVLQAWGEVRSY--TAFLEIFNQIRRLAYDSMQYLWGLRTVCPAIWELLNPATSLVLEMLKTTA
H2W6W3/309-531              -TVDHFYNSTLAEMCKSLPDEAQIVRIITNVKGVCKPEPHSFAVNVAEENLKELVSWAKTNQYFSKLKMDDQMNLLQTSWTTVHMVDIT------NAMVRG------------------------------------DLLPQYKISSGEEVAVGFVAL----LGNQAMVSTWNDIVLRLRNMGYNNYD---YCAFRFLALFDQYLERDPLVSTVRNQVLQSWSEVRCT--SSFIEIFEQIKRLAYESQVYLWELSNTCPQTWEQSN--SSLVLEMIR---
G0MWZ9/346-511              ----------------------------------------SFAV-----------------------LMDDQMNLLQTCWATVHIVDLT------YAMVLG------------------------------------NLPPTYKIANGEDVSVGFVAL----LGNQTYVNTWAELTNQLRNMGFNKFD---YCAFRFLALFDQSMEHLQVVSSARSQVLQAWAEVRCS--TGFLEIFEQLRRIAYDSIRYLWSLNSTCPRIWQQLNPDSSLVMEMIKTSA
#=GC scorecons              0001222221122222122211121221101110121214564534334363124136624326336245695566964945765655600000049962900000000000000000000000000000000000036243956339555456566900009554356235455534976756458900059599344444424312224423423444342444320022433443434433443224442413234124222231296947743301
#=GC scorecons_70           _________________________________________*_____________________________*__***__*__*_____*_______***_*_____________________________________*___*____*_____*_***____*_____*_________**_*____**____*_**_________________________________________________________________________***_**_____
#=GC scorecons_80           _______________________________________________________________________*____*__*__*_____________**__*_________________________________________*____*_________*____*_______________**______**____*_**_________________________________________________________________________*_*_*______
#=GC scorecons_90           _______________________________________________________________________*____*__*________________**__*_________________________________________*____*_________*____*_______________*_______**____*_**_________________________________________________________________________*_*________
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