# STOCKHOLM 1.0
#=GF ID 1.10.565.10/FF/5104
#=GF DE Nuclear hormone receptor family member nhr-121
#=GF AC 1.10.565.10/FF/5104
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 89.091
#=GS Q8ITW8/233-472      AC Q8ITW8
#=GS Q8ITW8/233-472      OS Caenorhabditis elegans
#=GS Q8ITW8/233-472      DE Nuclear Hormone Receptor family
#=GS Q8ITW8/233-472      DR GENE3D; bd9ea3e29bf0551d6515cb71d396e247/233-472; 
#=GS Q8ITW8/233-472      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q8ITW8/233-472      DR GO; GO:0005634; GO:0007275; GO:0008340; GO:0045923; GO:0045944; 
#=GS O76668/215-454      AC O76668
#=GS O76668/215-454      OS Caenorhabditis elegans
#=GS O76668/215-454      DE Nuclear Hormone Receptor family
#=GS O76668/215-454      DR GENE3D; 9858117754aa80f5186020173e018a7a/215-454; 
#=GS O76668/215-454      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS O76668/215-454      DR GO; GO:0005634; GO:0007275; GO:0045923; GO:0045944; 
#=GS Q9TZ99/205-455      AC Q9TZ99
#=GS Q9TZ99/205-455      OS Caenorhabditis elegans
#=GS Q9TZ99/205-455      DE Nuclear hormone receptor family member nhr-121
#=GS Q9TZ99/205-455      DR GENE3D; bb391bccc938ed4a349e3b3126318bf4/205-455; 
#=GS Q9TZ99/205-455      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q9TZ99/205-455      DR GO; GO:1990239; 
#=GS Q09528/235-477      AC Q09528
#=GS Q09528/235-477      OS Caenorhabditis elegans
#=GS Q09528/235-477      DE Nuclear hormone receptor family member nhr-19
#=GS Q09528/235-477      DR GENE3D; 2c0a94ee6883ff774aa1c79016ea36ae/235-477; 
#=GS Q09528/235-477      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q09528/235-477      DR GO; GO:0005515; 
#=GS Q09565/238-456      AC Q09565
#=GS Q09565/238-456      OS Caenorhabditis elegans
#=GS Q09565/238-456      DE Nuclear hormone receptor family member nhr-20
#=GS Q09565/238-456      DR GENE3D; fcedced571094c0bebc9f1be21a8f7f1/238-456; 
#=GS Q09565/238-456      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q09565/238-456      DR GO; GO:0005515; 
#=GS A8WJ04/205-457      AC A8WJ04
#=GS A8WJ04/205-457      OS Caenorhabditis elegans
#=GS A8WJ04/205-457      DE Nuclear Hormone Receptor family
#=GS A8WJ04/205-457      DR GENE3D; 6cf9df969d4217555185064608fc37ed/205-457; 
#=GS A8WJ04/205-457      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS A0A1I7UJZ1/224-462  AC A0A1I7UJZ1
#=GS A0A1I7UJZ1/224-462  OS Caenorhabditis tropicalis
#=GS A0A1I7UJZ1/224-462  DE Uncharacterized protein
#=GS A0A1I7UJZ1/224-462  DR GENE3D; 3c201089734f70c7c43f13d6c1061897/224-462; 
#=GS A0A1I7UJZ1/224-462  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS E3MSN1/247-478      AC E3MSN1
#=GS E3MSN1/247-478      OS Caenorhabditis remanei
#=GS E3MSN1/247-478      DE CRE-NHR-80 protein
#=GS E3MSN1/247-478      DR GENE3D; 792adc18c20ce3fba381fa8100a4c17e/247-478; 
#=GS E3MSN1/247-478      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A8XMM9/228-468      AC A8XMM9
#=GS A8XMM9/228-468      OS Caenorhabditis briggsae
#=GS A8XMM9/228-468      DE Protein CBR-NHR-80
#=GS A8XMM9/228-468      DR GENE3D; 971a25104fe8f345cc54d3c536da88a5/228-468; 
#=GS A8XMM9/228-468      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS G0MYQ3/226-466      AC G0MYQ3
#=GS G0MYQ3/226-466      OS Caenorhabditis brenneri
#=GS G0MYQ3/226-466      DE Putative uncharacterized protein
#=GS G0MYQ3/226-466      DR GENE3D; c3165e781c5814f9929406684cc67037/226-466; 
#=GS G0MYQ3/226-466      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS G0N886/220-471      AC G0N886
#=GS G0N886/220-471      OS Caenorhabditis brenneri
#=GS G0N886/220-471      DE Putative uncharacterized protein
#=GS G0N886/220-471      DR GENE3D; 6c8b498deaf89465f0310fe4e4fc3fbb/220-471; 
#=GS G0N886/220-471      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A8XMI5/308-561      AC A8XMI5
#=GS A8XMI5/308-561      OS Caenorhabditis briggsae
#=GS A8XMI5/308-561      DE Protein CBR-NHR-121
#=GS A8XMI5/308-561      DR GENE3D; 5f96e1db2f7a0026ca570beec900fa8c/308-561; 
#=GS A8XMI5/308-561      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GF TC 291.8 2.0E-90
#=GF SQ 12
Q8ITW8/233-472              --------------TLL--GQNKHCPYKKE----DIKPLVF--HDFRL---TIKTHIMLVYEWLQTWPELQELDDFDRMSLLRKAVLIHFLLDPSFLSYQI---GEPDKLIMQNGGFISTADHHGVGWEDETD-ISGENKR-----KYYVPIMKQITDEIMPAMEAMKITFEEFVALKALACFQG----GF-ENVSEAKRHLITQQVNRIMTSLHTHY--LENSEEKIAERFGTIVLMLSNIFTAGNDFVQNHREIDIFHIWDLDKLVLQLLNLDKIMETE
O76668/215-454              --------------TLL--GQNKHCPYKKE----DIKPLVF--HDFRL---TIKTHIMLVYEWLQTWPELQELDDFDRMSLLRKAVLIHFLLDPSFLSYQI---GEPDKLIMQNGGFISTADHHGVGWEDETD-ISGENKR-----KYYVPIMKQITDEIMPAMEAMKITFEEFVALKALACFQG----GF-ENVSEAKRHLITQQVNRIMTSLHTHY--LENSEEKIAERFGTIVLMLSNIFTAGNDFVQNHREIDIFHIWDLDKLVLQLLNLDKIMETE
Q9TZ99/205-455              ---KLLYCSNSCISELLTNENANEIPYSQS----NLQPLTF--AGIQK---HIRPQILVIYEWLRGWRHFELLNIKDKSVFLRRCVLYHTILDPSYLSYRL---GLPEKFVMFNGMYVGVQDGDKTGWEDEKDCITADLKI-----KLYRPLMDRLINEVCVSMKVINLTFVEFVLLKALVCFKS----STTCEVSVPLKKFMNTYMDTILRALNVHYQTLGMTKEDIAQRIGNVILMMSSIFAVGMECLESHQKIQFFDLWQLDDLLIKLIQRG------
Q09528/235-477              -------------------STSRYVPGGTSPNGGDHKMMVMLGTDISV---STQSELLMMLEWTRTLPVFASLPVQDRSVILKRFAVHCLILEHGYYTAQA---NIDDVWLITNG---TCMPRNVEKLEEGCK-ISVSADRRWRQEKLYKQMTDCCIDEVATPLRNLKLSPQEIVVIKIIVLFNCGCSSDY-SEITEASRRIVLTFRNKVVSALFAYYESV--GLQNYAERFGNLVLMLSGVSSAASSMLEAYQVMRLFKITPFDPLSQELLFNI------
Q09565/238-456              -------------------------------------------HSLKRQYESQRFDNLLAFDFCKCCPGFDFLSRVEKAIFFRSCSLAYCLLDIAWITVQAYPEEAAEPVLMYTDGSVCTVNNLSYGWDDEED-ICAHDKK-----KLFLGFLGRFNDAICRPIRNLKMTHVEFAALKALCIWKL----GY-CEFTPSMKVIGKEHEEALLNGLHNYYDDLYGNPDETGMRIGNLILLMGTVFEMNQLIMETYKSAELFELFKLDALSKSLLT--------
A8WJ04/205-457              ---KLLYCSNSCISELLTNENANEIPYSQS----NLQPLTF--AGIQK---HIRPQILVIYEWLRGWRHFELLNIKDKSVFLRRCVLYHTILDPSYLSYRL---GLPEKFVMFNGMYVGVQDGDKTGWEDEKDCITADLKI-----KLYRPLMDRLINEVCVSMKVINLTFVEFVLLKALVCFKSSI--SATCEVSVPLKKFMNTYMDTILRALNVHYQTLGMTKEDIAQRIGNVILMMSSIFAVGMECLESHQKIQFFDLWQLDDLLIKLIQRG------
A0A1I7UJZ1/224-462          ------------VGTLL--GQNRQCPYKKE----DIKPLNF--HDFRQ---TIKTHIMLVYEWLQTWPELQELDDFDRMSLLRKAVLIHFLLDPSFLSYQI---GEPDKLIMQNGGFISTADHHGVGWEDEPD-ISGENKR-----KYYVPIMKQITDEIMPPMQALKITFEEFVALKALACFQG----GF-ENVSEPKRPLITQQVNKVMRSLHRHY--LENSIERHEERFGTIVLMLSNIFTAGNDFVQNHREIDIFHIWDLDKLVLQLLNLDKII---
E3MSN1/247-478              ---------------------TRQCPYRKE----DIKPLIF--HDFRI---SIKTHIMLVHEWLEIWPEFEELDDFDRMSLLRKAVLIHFLLDPSFLTFQI---GEPDKLIMQNGGFISTADHKGVGWEDEPD-ISGENKR-----KYYVPIMKQITDEIMPAMQAMNITFEEFVALKALASFQG----GF-ENVSEAKRHLITQQVNRVLNSLHAHY--MEKGEEKAAERFGAIVLMLSNIFTAGNDFVKNHREIDIFHIWDLDELGLQLLNLDKIL---
A8XMM9/228-468              -------------GTLL--GQNRQCPYKKE----DIKPLVF--HDFRL---TIKTHIMLVYEWLQSWPELQELDDFDRMSLLRKAVLIHFLLDPSFLSYQI---GEPDKLIMQNGGFISTADHHGVGWEDEPD-ISGENKR-----KYYVPIMKQITDEIMPAMKAMSITFEEFVALKALACFQG----GF-ENVSEAKRHLITQQVNRVLSSLHTHY--LESSEEKIAERFGTIVLMLSNIFTAGNDFVKNHREIDIFHIWDLDKLVLQLLNLDKIMETE
G0MYQ3/226-466              -------------GTLL--GQNRQCPYKKE----DIKPLVF--HDFRL---TIKTHIMLVYEWLQIWPELQELDDFDRMSLLRKAVLIHFLLDPSFLSYQI---GEPDKLIMQNGGFISTADHHGVGWEDEPD-ISGENKR-----KYYVPIMKQITDEIMPAMQAMNITFEEFVALKALACFQG----GF-ENVSEAKRHLITQQVNRVMNSLHAHY--LENEIEDVAERFGTIVLMLSNIFTAGNDFVQNHREIDIFHIWDLDKLVLQLLNLDKIMETE
G0N886/220-471              --RKLLYCSNSCISQLLTNENSNDIPYSQP----DLQPLTF--AGIQK---HIRPQILVIYEWLRGWRHFEILNTKDRLIFLRRCVLYHTILDPSYLSYRL---GLPEKFVMFNGMYVGAQPGDKTGWEDEKDCISSDLKI-----KLYRPLMERLVNEVCVSMNAISLSFVEFVLLKALVSFKS----STCCDVSDPLKKFMNGYMDTILRALNVHYQTLGMGRDLIAQRIGNVILMMSSIFAVGMECLESHQKIQFFDLWQLDDLLIKLIQRG------
A8XMI5/308-561              ERRKLLYCSNNSISNLITNENSNEIPYSLS----DLQPLTF--AGIQK---HIRPQILVIYEWLRGWRHFELLNTRDRMIFLRRCVLYHTILDPSYLSYRL---GLPEKFVMFNGMYVGAQAGNKTGWEDENDCISSDLKI-----KLYRPLMERLVNEVCVSMKAINLSFTEFVLLKALVSFKS----STCCDVSEPLKKFMNSYMDSILRALNIHYQSLGMSKDEIAQRIGNVILMMSSIFAVGMECLESHQKIQFFDLWQLDDLLIKLIQRG------
#=GC scorecons              00000000000011133003334336433300005345535004555300045645666568755365464394338744578546736469856666564000636754573773454444433377887370964537400000958365645446774457455556549775797754754000054045664537454444454664595379117324363465959557976747745634455475464594654793944496323110000
#=GC scorecons_70           _________________________*___________________________*___*__***______*__*___**___**___*_*_***_*_**_*____*__*___*_**___________*****_*_*____*______*_*___*____***___*_____*__***_****__*___________**___*_________**__*__**__*____*__*_*_*__*****_**__*______*__*__*_*__**_*___**_________
#=GC scorecons_80           _____________________________________________________________**_________*___**___**___*____**__________________*_**___________*****_*_*____*______*_*_________*_____________***_****__*______________________________*__**__*_________*_*___**_*_**_________*_____*____**_*___*__________
#=GC scorecons_90           _____________________________________________________________*__________*___*_____*________**___________________________________**____*___________*_*_______________________*____*___________________________________*___*____________*_*___*_____________________*_____*_*___*__________
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