# STOCKHOLM 1.0
#=GF ID 1.10.565.10/FF/4889
#=GF DE Nuclear hormone receptor family member nhr-49
#=GF AC 1.10.565.10/FF/4889
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 34.442
#=GS O45666/199-431      AC O45666
#=GS O45666/199-431      OS Caenorhabditis elegans
#=GS O45666/199-431      DE Nuclear hormone receptor family member nhr-49
#=GS O45666/199-431      DR GENE3D; 85ab9389b42685d9c3d535d9b9180cba/199-431; 
#=GS O45666/199-431      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS O45666/199-431      DR GO; GO:0005515; GO:0005634; GO:0005737; GO:0008340; GO:0019216; GO:0019217; GO:0036003; GO:0045944; 
#=GS E5QCI8/50-284       AC E5QCI8
#=GS E5QCI8/50-284       OS Caenorhabditis elegans
#=GS E5QCI8/50-284       DE Nuclear Hormone Receptor family
#=GS E5QCI8/50-284       DR GENE3D; 040efc233bfdee4f3043caa03a867267/50-284; 
#=GS E5QCI8/50-284       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS E5QCI8/50-284       DR GO; GO:0005515; GO:0005634; GO:0008340; GO:0019216; GO:0019217; GO:0045944; 
#=GS E3M3B9/201-425      AC E3M3B9
#=GS E3M3B9/201-425      OS Caenorhabditis remanei
#=GS E3M3B9/201-425      DE CRE-NHR-49 protein
#=GS E3M3B9/201-425      DR GENE3D; 292d7dd2ecbf2b5e23b80ad2c8a64f9b/201-425; 
#=GS E3M3B9/201-425      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A8WWW4/163-405      AC A8WWW4
#=GS A8WWW4/163-405      OS Caenorhabditis briggsae
#=GS A8WWW4/163-405      DE Protein CBR-NHR-49
#=GS A8WWW4/163-405      DR GENE3D; 967b09db2e0f98849a74d0c98554a264/163-405; 
#=GS A8WWW4/163-405      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS G0P1Q8/176-407      AC G0P1Q8
#=GS G0P1Q8/176-407      OS Caenorhabditis brenneri
#=GS G0P1Q8/176-407      DE Putative uncharacterized protein
#=GS G0P1Q8/176-407      DR GENE3D; 967caa5a0508d9286962d12b62ec81ac/176-407; 
#=GS G0P1Q8/176-407      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS G0MFM3/176-407      AC G0MFM3
#=GS G0MFM3/176-407      OS Caenorhabditis brenneri
#=GS G0MFM3/176-407      DE Putative uncharacterized protein
#=GS G0MFM3/176-407      DR GENE3D; a60dccfdc30431af460196df961db417/176-407; 
#=GS G0MFM3/176-407      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS H2WH56/100-341      AC H2WH56
#=GS H2WH56/100-341      OS Caenorhabditis japonica
#=GS H2WH56/100-341      DE Uncharacterized protein
#=GS H2WH56/100-341      DR GENE3D; fd97951a3a2d19834df3f7820d62eae5/100-341; 
#=GS H2WH56/100-341      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS A0A0C2GR46/110-341  AC A0A0C2GR46
#=GS A0A0C2GR46/110-341  OS Ancylostoma duodenale
#=GS A0A0C2GR46/110-341  DE Ligand-binding domain of nuclear hormone receptor
#=GS A0A0C2GR46/110-341  DR GENE3D; fb78ac27d155248976e594f03734f16d/110-341; 
#=GS A0A0C2GR46/110-341  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma duodenale; 
#=GS A0A0B2UP53/114-367  AC A0A0B2UP53
#=GS A0A0B2UP53/114-367  OS Toxocara canis
#=GS A0A0B2UP53/114-367  DE Nuclear hormone receptor family member nhr-49
#=GS A0A0B2UP53/114-367  DR GENE3D; f939adc4f4b42fa8840f514df927d21a/114-367; 
#=GS A0A0B2UP53/114-367  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Ascaridida; Ascaridoidea; Toxocaridae; Toxocara; Toxocara canis; 
#=GS U1NY33/140-399      AC U1NY33
#=GS U1NY33/140-399      OS Ascaris suum
#=GS U1NY33/140-399      DE Nuclear hormone receptor family member nhr-49
#=GS U1NY33/140-399      DR GENE3D; 17e6f106ca649416e0d2a81d66fdd879/140-399; 
#=GS U1NY33/140-399      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Ascaridida; Ascaridoidea; Ascarididae; Ascaris; Ascaris suum; 
#=GF TC 473.3 8.2E-146
#=GF SQ 10
O45666/199-431              ---------------------------DIQQGSDS-G-ASAFAPPNRPCTTEVDLNEISRTTLLLMVEWAKTINPFMDLSMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNSSQIMIRDARNRVLKALYAFILDQMPDDAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHSTAPV-
E5QCI8/50-284               ------------------------NDTDIQQGSDS-G-ASAFAPPNRPCTTE-DLNEISRTTLLLMVEWAKTINPFMDLSMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNSSQIMIRDARNRVLKALYAFILDQMPDDAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHSTAPV-
E3M3B9/201-425              ----------------------------------D-G--SAFAPPNRACTTEVDLNEISRTTLLLMVEWAKTITPFMDLSMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNTSQIMIRDARNRVLKALYAFILDQMPDEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHSTAPV-
A8WWW4/163-405              N--GTAGNE-------------AEA-ASIQQVASD-G--SAFAPPNRPCTTTEDLNEISRTTLLLMVEWAKTITPFMELSMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNASQIMIRDARNRVLKALYAFILDQMPDEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHSAAPA-
G0P1Q8/176-407              ---------------------------TISQGASD-G--SAFAPPNRPCTTEVDLNEISRTTLLLMVEWAKTISPFMDLSMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNTSQGLIRDARNRVLKALYAFILEQMPDEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHTTAPV-
G0MFM3/176-407              ---------------------------TISQGASD-G--SAFAPPNRPCTTEVDLNEISRTTLLLMVEWAKTISPFMDLSMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNTSQGLIRDARNRVLKALYAFILEQMPDEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHTTAPV-
H2WH56/100-341              -----EANG-------------AQVDPVLQQAAESTG-SSAFAPPNRPCTTE-DLNEISRTTLLLMVEWAKTINPFMELSMDDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMTRDNNTDLNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSNESQILIRDARNRVLKALYAFILDQMPDEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDINDHSTAPV-
A0A0C2GR46/110-341          ----------------NSVIQPATTTGLSSDGEPS---TSAFSQPNKPCTAE-DLNEISRTTLLLMVEWAKALQPFPNLIMEDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMSRDQSNELNGFAAFKTSNITPRVLDEIVWPMRQLQMREEEFVCLKALAFLHPEAKGLSVQSQTLVREARNKVLKALYAFIVENNRDEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILD-----------
A0A0B2UP53/114-367          -----RVNQEMSVRYRTSVI--TSSDSLHSAGPEMGGSTSAFTQPCRPCTID-DLNEISRTTLLLMVEWAKNLFPFPDLAMDDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMSRDQGTELNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSSSAQSVIREARNRVLKALYAYIVEQLPDEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDISDHSCAPA-
U1NY33/140-399              MEMEARVNQEMSARYRTSVI--TSSDSLHSGRPEMGGSTSAFTQPCRPCTID-DLNEISRTTLLLMVEWAKNLSPFPDLAMDDKIILLKNYAPQHLILMPAFRSPDTTRVCLFNNTYMSRDQGAELNGFAAFKTSNITPRVLDEIVWPMRQLQMREQEFVCLKALAFLHPEAKGLSAPAQSVIREARNRVLKALYAYIVEQLPDEAPTRYGNILLLAPALKALTQLLIENMTLTKFFGLAEVDSLLSEFILDDLNDHSSAPAS
#=GC scorecons              00000001000000000111001111122434334060299955967899560999999999999999999563995695979999999999999999999999999999999999996995567999999999999999999999999999999979999999999999999999436945797999799999997967757979999999999999999999999999999999999999999999999965566536640
#=GC scorecons_70           ____________________________________*__***__*_****_*_******************_*_**_**_**************************************_**__*****************************************************__**__*******************_***************************************************__**__**__
#=GC scorecons_80           _______________________________________***__*_****___******************___**__*_*_************************************_**____***************************************************___*__**_*************__*__*************************************************___________
#=GC scorecons_90           _______________________________________***__*___**___******************___**__*_*_************************************_**____*******************************_*******************___*___*_***_*******_*_____*_***********************************************___________
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