# STOCKHOLM 1.0 #=GF ID 1.10.472.10/FF/9462 #=GF DE RNA polymerase II holoenzyme cyclin-like subunit #=GF AC 1.10.472.10/FF/9462 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 34.645 #=GS P47821/5-19_177-306 AC P47821 #=GS P47821/5-19_177-306 OS Saccharomyces cerevisiae S288C #=GS P47821/5-19_177-306 DE RNA polymerase II holoenzyme cyclin-like subunit #=GS P47821/5-19_177-306 DR GENE3D; 9eb804a77b6345e85aa038951408b34f/5-19_177-306; #=GS P47821/5-19_177-306 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS P47821/5-19_177-306 DR GO; GO:0000122; GO:0000411; GO:0000979; GO:0010673; GO:0016538; GO:0016592; GO:0045944; #=GS E7KHC2/84-213 AC E7KHC2 #=GS E7KHC2/84-213 OS Saccharomyces cerevisiae AWRI796 #=GS E7KHC2/84-213 DE Ssn8p #=GS E7KHC2/84-213 DR GENE3D; 08d9bd41cbf350ca8ee50239ae779e7a/84-213; #=GS E7KHC2/84-213 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS B3LPR0/5-19_177-306 AC B3LPR0 #=GS B3LPR0/5-19_177-306 OS Saccharomyces cerevisiae RM11-1a #=GS B3LPR0/5-19_177-306 DE Uncharacterized protein #=GS B3LPR0/5-19_177-306 DR GENE3D; 28de03d22f658041b2782066fc2d08ab/5-19_177-306; #=GS B3LPR0/5-19_177-306 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS E7KTP0/134-263 AC E7KTP0 #=GS E7KTP0/134-263 OS Saccharomyces cerevisiae Lalvin QA23 #=GS E7KTP0/134-263 DE Ssn8p #=GS E7KTP0/134-263 DR GENE3D; 39bc7eac2eff17b956bd8be1e9365987/134-263; #=GS E7KTP0/134-263 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS E7LZN1/5-19_177-306 AC E7LZN1 #=GS E7LZN1/5-19_177-306 OS Saccharomyces cerevisiae Vin13 #=GS E7LZN1/5-19_177-306 DE Ssn8p #=GS E7LZN1/5-19_177-306 DR GENE3D; 9eb804a77b6345e85aa038951408b34f/5-19_177-306; #=GS E7LZN1/5-19_177-306 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS C8ZFK2/5-19_177-306 AC C8ZFK2 #=GS C8ZFK2/5-19_177-306 OS Saccharomyces cerevisiae EC1118 #=GS C8ZFK2/5-19_177-306 DE Ssn8p #=GS C8ZFK2/5-19_177-306 DR GENE3D; 9eb804a77b6345e85aa038951408b34f/5-19_177-306; #=GS C8ZFK2/5-19_177-306 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS N1P4K8/5-19_177-306 AC N1P4K8 #=GS N1P4K8/5-19_177-306 OS Saccharomyces cerevisiae CEN.PK113-7D #=GS N1P4K8/5-19_177-306 DE Ssn8p #=GS N1P4K8/5-19_177-306 DR GENE3D; 9eb804a77b6345e85aa038951408b34f/5-19_177-306; #=GS N1P4K8/5-19_177-306 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS H0GMQ4/5-19_177-306 AC H0GMQ4 #=GS H0GMQ4/5-19_177-306 OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 #=GS H0GMQ4/5-19_177-306 DE Ssn8p #=GS H0GMQ4/5-19_177-306 DR GENE3D; 9eb804a77b6345e85aa038951408b34f/5-19_177-306; #=GS H0GMQ4/5-19_177-306 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; #=GS G2WM77/5-19_177-306 AC G2WM77 #=GS G2WM77/5-19_177-306 OS Saccharomyces cerevisiae Kyokai no. 7 #=GS G2WM77/5-19_177-306 DE K7_Ssn8p #=GS G2WM77/5-19_177-306 DR GENE3D; 9eb804a77b6345e85aa038951408b34f/5-19_177-306; #=GS G2WM77/5-19_177-306 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS C7GWP3/5-19_177-306 AC C7GWP3 #=GS C7GWP3/5-19_177-306 OS Saccharomyces cerevisiae JAY291 #=GS C7GWP3/5-19_177-306 DE Ssn8p #=GS C7GWP3/5-19_177-306 DR GENE3D; 9eb804a77b6345e85aa038951408b34f/5-19_177-306; #=GS C7GWP3/5-19_177-306 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS B5VR12/5-19_177-306 AC B5VR12 #=GS B5VR12/5-19_177-306 OS Saccharomyces cerevisiae AWRI1631 #=GS B5VR12/5-19_177-306 DE YNL025Cp-like protein #=GS B5VR12/5-19_177-306 DR GENE3D; 9eb804a77b6345e85aa038951408b34f/5-19_177-306; #=GS B5VR12/5-19_177-306 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS A6ZS52/5-19_177-306 AC A6ZS52 #=GS A6ZS52/5-19_177-306 OS Saccharomyces cerevisiae YJM789 #=GS A6ZS52/5-19_177-306 DE Mediator complex subunit #=GS A6ZS52/5-19_177-306 DR GENE3D; 9eb804a77b6345e85aa038951408b34f/5-19_177-306; #=GS A6ZS52/5-19_177-306 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS E7QK23/5-19_177-306 AC E7QK23 #=GS E7QK23/5-19_177-306 OS Saccharomyces cerevisiae VL3 #=GS E7QK23/5-19_177-306 DE Ssn8p #=GS E7QK23/5-19_177-306 DR GENE3D; 9eb804a77b6345e85aa038951408b34f/5-19_177-306; #=GS E7QK23/5-19_177-306 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS E7NMD9/5-19_177-306 AC E7NMD9 #=GS E7NMD9/5-19_177-306 OS Saccharomyces cerevisiae FostersO #=GS E7NMD9/5-19_177-306 DE Ssn8p #=GS E7NMD9/5-19_177-306 DR GENE3D; 9eb804a77b6345e85aa038951408b34f/5-19_177-306; #=GS E7NMD9/5-19_177-306 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS A0A0L8VIR5/5-19_177-306 AC A0A0L8VIR5 #=GS A0A0L8VIR5/5-19_177-306 OS Saccharomyces sp. 'boulardii' #=GS A0A0L8VIR5/5-19_177-306 DE SSN8p Cyclin-like component of the RNA polymerase II holoenzyme #=GS A0A0L8VIR5/5-19_177-306 DR GENE3D; 9eb804a77b6345e85aa038951408b34f/5-19_177-306; #=GS A0A0L8VIR5/5-19_177-306 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; #=GS E7Q8P9/5-19_177-306 AC E7Q8P9 #=GS E7Q8P9/5-19_177-306 OS Saccharomyces cerevisiae FostersB #=GS E7Q8P9/5-19_177-306 DE Ssn8p #=GS E7Q8P9/5-19_177-306 DR GENE3D; c431cf23a1e8444e8494f64f08c742b1/5-19_177-306; #=GS E7Q8P9/5-19_177-306 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS A0A0L8RCQ0/5-19_177-306 AC A0A0L8RCQ0 #=GS A0A0L8RCQ0/5-19_177-306 OS Saccharomyces eubayanus #=GS A0A0L8RCQ0/5-19_177-306 DE SSN8-like protein #=GS A0A0L8RCQ0/5-19_177-306 DR GENE3D; f883db3fc625e88c89695acb45c6ba18/5-19_177-306; #=GS A0A0L8RCQ0/5-19_177-306 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces eubayanus; #=GS A0A0W0DTH6/195-322 AC A0A0W0DTH6 #=GS A0A0W0DTH6/195-322 OS [Candida] glabrata #=GS A0A0W0DTH6/195-322 DE RNA polymerase II holoenzyme cyclin-like subunit #=GS A0A0W0DTH6/195-322 DR GENE3D; c86f6de3209de309edbaaf41edf077e7/195-322; #=GS A0A0W0DTH6/195-322 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces; [Candida] glabrata; #=GS Q6FJE8/195-322 AC Q6FJE8 #=GS Q6FJE8/195-322 OS Candida glabrata CBS 138 #=GS Q6FJE8/195-322 DE RNA polymerase II holoenzyme cyclin-like subunit #=GS Q6FJE8/195-322 DR GENE3D; c86f6de3209de309edbaaf41edf077e7/195-322; #=GS Q6FJE8/195-322 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Nakaseomyces; [Candida] glabrata; #=GF TC 248.7 9.3E-78 #=GF SQ 19 P47821/5-19_177-306 FWTSTQRHHWQYTKAVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGKPTKGSSLASAASEAIRDPKNSSSPVQIAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ E7KHC2/84-213 ---------------VHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGKPTKGSSLASAASEAIRDPKNSSSPVQIAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ B3LPR0/5-19_177-306 FWTSTQRHHWQYTKAVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGKPTKGSSLASAASEAIRDPKNSSSPVQIAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ E7KTP0/134-263 ---------------VHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGKPTKGSSLASAASEAIRDPKNSSSPVQIAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ E7LZN1/5-19_177-306 FWTSTQRHHWQYTKAVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGKPTKGSSLASAASEAIRDPKNSSSPVQIAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ C8ZFK2/5-19_177-306 FWTSTQRHHWQYTKAVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGKPTKGSSLASAASEAIRDPKNSSSPVQIAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ N1P4K8/5-19_177-306 FWTSTQRHHWQYTKAVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGKPTKGSSLASAASEAIRDPKNSSSPVQIAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ H0GMQ4/5-19_177-306 FWTSTQRHHWQYTKAVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGKPTKGSSLASAASEAIRDPKNSSSPVQIAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ G2WM77/5-19_177-306 FWTSTQRHHWQYTKAVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGKPTKGSSLASAASEAIRDPKNSSSPVQIAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ C7GWP3/5-19_177-306 FWTSTQRHHWQYTKAVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGKPTKGSSLASAASEAIRDPKNSSSPVQIAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ B5VR12/5-19_177-306 FWTSTQRHHWQYTKAVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGKPTKGSSLASAASEAIRDPKNSSSPVQIAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ A6ZS52/5-19_177-306 FWTSTQRHHWQYTKAVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGKPTKGSSLASAASEAIRDPKNSSSPVQIAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ E7QK23/5-19_177-306 FWTSTQRHHWQYTKAVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGKPTKGSSLASAASEAIRDPKNSSSPVQIAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ E7NMD9/5-19_177-306 FWTSTQRHHWQYTKAVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGKPTKGSSLASAASEAIRDPKNSSSPVQIAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ A0A0L8VIR5/5-19_177-306 FWTSTQRHHWQYTKAVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGKPTKGSSLASAASEAIRDPKNSSSPVQIAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ E7Q8P9/5-19_177-306 FWTSTQRHHWQYTKAVHHPYQSLKQIVQVLKQPPFQITLSSDDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGKPTKGSSLASAASEAIRDPKNSSSPVQIAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ A0A0L8RCQ0/5-19_177-306 FWTSTQRHHWQYTKAVHHPYQSLKQIVQVLKQPPFQLTLSSEDLQNCWSLINDSYINDVHLLYPPHIIAVACLFITISIHGRSTKGSSLASMASEAIRGSESSGSPAQLAFNRFMAESLVDLEEVMDTIQEQITLYDHWDKYHEQ A0A0W0DTH6/195-322 ---------------VHHPYKSMEQIVEALKEEPFKLTFTSDELQNCWSLINDSFINDVHLTYAPHIIAMACLFITVSIQGSNTKELSLTSAVTETLT-SQSSLTPQQQTFFRFLAESHVDLEEVMDTIQQQIILYDHWDRYHE- Q6FJE8/195-322 ---------------VHHPYKSMEQIVEALKEEPFKLTFTSDELQNCWSLINDSFINDVHLTYAPHIIAMACLFITVSIQGSNTKELSLTSAVTETLT-SQSSLTPQQQTFFRFLAESHVDLEEVMDTIQQQIILYDHWDRYHE- #=GC scorecons 2222222222222229999969669996699659966966987999999999997999999596999996999999799695599659969866966536669469494695996999599999999999699699999979993 #=GC scorecons_70 _______________********_****_***_******_*********************_*_*****************__**__*****__***_____*__*_*_**_******_**************_**********_ #=GC scorecons_80 _______________*****_*__***__**__**__*__**_******************_*_*****_******_**_*__**__**_**__*_______*__*_*__*_**_***_***********_**_******_***_ #=GC scorecons_90 _______________*****_*__***__**__**__*__**_***********_******_*_*****_******_**_*__**__**_**__*_______*__*_*__*_**_***_***********_**_******_***_ //