# STOCKHOLM 1.0
#=GF ID 1.10.375.10/FF/796
#=GF DE Retrovirus-related Gag polyprotein
#=GF AC 1.10.375.10/FF/796
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 64.838
#=GS Q7TQ39/238-371    AC Q7TQ39
#=GS Q7TQ39/238-371    OS Mus musculus
#=GS Q7TQ39/238-371    DE Gag protein
#=GS Q7TQ39/238-371    DR GENE3D; 2d5f548c4f1ba8db8b9cbc105ee0e365/238-371; 
#=GS Q7TQ39/238-371    DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q1W5W7/208-334    AC Q1W5W7
#=GS Q1W5W7/208-334    OS Mus musculus
#=GS Q1W5W7/208-334    DE Putative gag-pol protein
#=GS Q1W5W7/208-334    DR GENE3D; 897f83e2a77ee4d1b7269c1fa083d800/208-334; 
#=GS Q1W5W7/208-334    DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS P03975/220-355    AC P03975
#=GS P03975/220-355    OS Mus musculus
#=GS P03975/220-355    DE IgE-binding protein
#=GS P03975/220-355    DR GENE3D; ccc46de517f54781b65c447ddabce729/220-355; 
#=GS P03975/220-355    DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q64033/251-384    AC Q64033
#=GS Q64033/251-384    OS Mus sp.
#=GS Q64033/251-384    DE Antigen LEC-A
#=GS Q64033/251-384    DR GENE3D; a5a04f372f86d7a1c2aa650ab5d2b642/251-384; 
#=GS Q64033/251-384    DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus sp.; 
#=GS Q60505/225-358    AC Q60505
#=GS Q60505/225-358    OS Cricetulus sp.
#=GS Q60505/225-358    DE Chinese hamster provirus
#=GS Q60505/225-358    DR GENE3D; ce657f9d33545c43e8f93ded64d50007/225-358; 
#=GS Q60505/225-358    DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Cricetidae; Cricetinae; Cricetulus; Cricetulus sp.; 
#=GS A0A061I1P1/4-144  AC A0A061I1P1
#=GS A0A061I1P1/4-144  OS Cricetulus griseus
#=GS A0A061I1P1/4-144  DE Retrovirus capsid, core containing protein
#=GS A0A061I1P1/4-144  DR GENE3D; f3a6dddbad0049011353a2f7036c42f7/4-144; 
#=GS A0A061I1P1/4-144  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Cricetidae; Cricetinae; Cricetulus; Cricetulus griseus; 
#=GS Q4Y9H6/210-301    AC Q4Y9H6
#=GS Q4Y9H6/210-301    OS Plasmodium berghei ANKA
#=GS Q4Y9H6/210-301    DE Putative uncharacterized protein
#=GS Q4Y9H6/210-301    DR GENE3D; 52879b408e39584e097c85fed64e1625/210-301; 
#=GS Q4Y9H6/210-301    DR ORG; Eukaryota; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Vinckeia); Plasmodium berghei; 
#=GS P11365/219-352    AC P11365
#=GS P11365/219-352    OS Mouse intracisternal A-particle MIA14
#=GS P11365/219-352    DE Retrovirus-related Gag polyprotein
#=GS P11365/219-352    DR GENE3D; fa0fd9cff711695a04a62be6ba9987e5/219-352; 
#=GS P11365/219-352    DR ORG; Viruses; Retroviridae; Intracisternal A-particles; Mouse Intracisternal A-particle; 
#=GS P04023/256-362    AC P04023
#=GS P04023/256-362    OS Golden hamster intracisternal A-particle H18
#=GS P04023/256-362    DE Retrovirus-related Gag polyprotein
#=GS P04023/256-362    DR GENE3D; c5f403733946d95a02551ab424d8331b/256-362; 
#=GS P04023/256-362    DR ORG; Viruses; Retroviridae; Intracisternal A-particles; Golden hamster intracisternal A-particle H18; 
#=GF TC 196.1 1.1E-61
#=GF SQ 9
Q7TQ39/238-371            -VFEGAEGGRVHAPVEYVQIKEIAESVRKYGTNANFTLVQLDRLAGMALTPADWQTVVKAALPSMGKYMEWKALWHEAAQAQARANAAALTPEQRDWTFDLLTG--QGAYSAD-QTNYHWGAYAQISSTAIRAWKALS-------
Q1W5W7/208-334            PVFKGAEGGRVHAPVEYVQIKEIAESVRKYGTNANFTLAQLDRLAGVALTPADWQMIAKVALPSMAKYVEWRALWQEAAQAQARANAAALTPEQRDWTFDLLTG--QRAYSAEPDKRYQWKILPQGMSN----------------
P03975/220-355            -VFEGAEGGRVHAPVEYLQIKEIAESVRKYGTNANFTLVQLDRLAGMALTPADWQTVVKAALPSMGKYMEWRALWHEAAQAQARANAAALTPEQRDWTFDLLTG--QGAYSAD-QTNYHWGAYAQISSTAIRPGRRSR-----AG
Q64033/251-384            -VFEGAEGGRVHAPVEYLQIKEIAESVRKYGTNANFTLVQLDRLAGMALTPADWQTVVKAALPSMGKYMEWRALWHEAAQAQARANAAALTPEQRDWTFDLLTG--QGAYSAD-QTNYHWGAYAQISSTAIRAWKALS-------
Q60505/225-358            PVFEN-EGARVHAPVDYNQIKELAESVRKYGVNANFTTIQVERLANYAMTPTDWETTVKAVLPNMGQYMEWKALFYDAAQAQAKANVTAENENQRQWTFEMLTG--QGPHALN-QTNYIWGVYAQISAAAIKAWKALT-------
A0A061I1P1/4-144          PVFEN-EGARVHTPIDYNQIKELAESVRKYGVNANFTSIQVERLANYAMTPTDWETTVKAVLPNMGQYMEWKALWYDAAQAQAKANVTAENENQRQWTFEMLTG--QGPHALN-QTNYIWSVYAQISAAAIKAWNALTKRDESGG
Q4Y9H6/210-301            PVFEGAEGGRVHAPVEYLQIKEIAESVRKYGTNANFTLVQLDRLAGMALTPADWQTVVKAALPSMGKYMEWRALWHEAAQAQARANAAALLQ-----------------------------------------------------
P11365/219-352            -VFEGAEGGRVHAPVEYLQIKELAESVRKYGTNANFTLVQLDRLAGMALTPADWQTVVKAALPMMGKYMEWRALWHETAQAQARANAAALTPEQRDWTFDLLTG--QGAYSAD-QTNYHWGAYAQISSTAIRRWKGLS-------
P04023/256-362            PVFENAEGGRVHTPVDYNQIKELAESVRNYGVNANFTTLQVERLANFAMTPTDWQTTVKAVLPNMGQYMEWKALWYDAAQAQARVNATAGRSSGH------LTKIVQGP-----QEPF---------------------------
#=GC scorecons            3997559969996987939999699999799599999459679995496996997757976995976979969976789999977966933434524443366400654322205335142233423222221211210000000
#=GC scorecons_70         _***__***********_****_********_*****__******__*********_***_**_***********_*************________________________________________________________
#=GC scorecons_80         _***__**_***_**_*_****_********_*****__*__***__*_**_**_*_***_**_**_****_***__*********__*________________________________________________________
#=GC scorecons_90         _**___**_***_**_*_****_*****_**_*****__*__***__*_**_**____*__**_*__*_**_**___******__*__*________________________________________________________
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