# STOCKHOLM 1.0 #=GF ID 1.10.375.10/FF/301 #=GF DE Gag polyprotein #=GF AC 1.10.375.10/FF/301 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 65.903 #=GS Q6RFG3/1-95 AC Q6RFG3 #=GS Q6RFG3/1-95 OS Feline immunodeficiency virus #=GS Q6RFG3/1-95 DE Gag protein #=GS Q6RFG3/1-95 DR GENE3D; 1d7a4c9eb15f72a7d6d7be73ccad4c70/1-95; #=GS Q6RFG3/1-95 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS Q66968/52-193 AC Q66968 #=GS Q66968/52-193 OS Feline immunodeficiency virus #=GS Q66968/52-193 DE Gag protein #=GS Q66968/52-193 DR GENE3D; 2a8cf54417708096099ac260c950fedd/52-193; #=GS Q66968/52-193 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS A3R3J7/160-301 AC A3R3J7 #=GS A3R3J7/160-301 OS Feline immunodeficiency virus #=GS A3R3J7/160-301 DE Gag polyprotein #=GS A3R3J7/160-301 DR GENE3D; 3fa96cfdb1fdabcc8e7814c49944830f/160-301; #=GS A3R3J7/160-301 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS Q6XPH3/65-172 AC Q6XPH3 #=GS Q6XPH3/65-172 OS Feline immunodeficiency virus #=GS Q6XPH3/65-172 DE Gag protein #=GS Q6XPH3/65-172 DR GENE3D; 44703ea7f54a0b67aeb65fc48ec392a5/65-172; #=GS Q6XPH3/65-172 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS P89686/156-297 AC P89686 #=GS P89686/156-297 OS Feline immunodeficiency virus #=GS P89686/156-297 DE Gag polyprotein #=GS P89686/156-297 DR GENE3D; 7363dc241a6144dade133bd766e98193/156-297; #=GS P89686/156-297 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS Q6XPI0/50-157 AC Q6XPI0 #=GS Q6XPI0/50-157 OS Feline immunodeficiency virus #=GS Q6XPI0/50-157 DE Gag protein #=GS Q6XPI0/50-157 DR GENE3D; 75b8f81460acc1d4728c0354dfb039bb/50-157; #=GS Q6XPI0/50-157 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS Q6H299/136-245 AC Q6H299 #=GS Q6H299/136-245 OS Feline immunodeficiency virus #=GS Q6H299/136-245 DE Gag protein #=GS Q6H299/136-245 DR GENE3D; 7bafc39d6e74317128d993da9961b8a5/136-245; #=GS Q6H299/136-245 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS Q784Z3/47-158 AC Q784Z3 #=GS Q784Z3/47-158 OS Feline immunodeficiency virus #=GS Q784Z3/47-158 DE Gag protein #=GS Q784Z3/47-158 DR GENE3D; 85c4d64c8100f307e6130efbef9c13fa/47-158; #=GS Q784Z3/47-158 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS Q9W865/47-158 AC Q9W865 #=GS Q9W865/47-158 OS Feline immunodeficiency virus #=GS Q9W865/47-158 DE Gag protein #=GS Q9W865/47-158 DR GENE3D; 85c4d64c8100f307e6130efbef9c13fa/47-158; #=GS Q9W865/47-158 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS Q6XPH2/136-243 AC Q6XPH2 #=GS Q6XPH2/136-243 OS Feline immunodeficiency virus #=GS Q6XPH2/136-243 DE Gag protein #=GS Q6XPH2/136-243 DR GENE3D; 96c98f4bdfd4bebc544cb868398b15cb/136-243; #=GS Q6XPH2/136-243 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS Q8ASR2/6-124 AC Q8ASR2 #=GS Q8ASR2/6-124 OS Feline immunodeficiency virus #=GS Q8ASR2/6-124 DE p24 capsid protein #=GS Q8ASR2/6-124 DR GENE3D; 9f7e947ff4ff3ee31b43d8c23f33bf97/6-124; #=GS Q8ASR2/6-124 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS Q8ASR3/6-124 AC Q8ASR3 #=GS Q8ASR3/6-124 OS Feline immunodeficiency virus #=GS Q8ASR3/6-124 DE p24 capsid protein #=GS Q8ASR3/6-124 DR GENE3D; 9f7e947ff4ff3ee31b43d8c23f33bf97/6-124; #=GS Q8ASR3/6-124 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS A0A0B4WUX7/25-166 AC A0A0B4WUX7 #=GS A0A0B4WUX7/25-166 OS Feline immunodeficiency virus #=GS A0A0B4WUX7/25-166 DE Gag protein #=GS A0A0B4WUX7/25-166 DR GENE3D; a290a7b450dfeb6f6901f5d2a6753218/25-166; #=GS A0A0B4WUX7/25-166 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS P16087/136-277 AC P16087 #=GS P16087/136-277 OS Feline immunodeficiency virus (isolate Petaluma) #=GS P16087/136-277 DE Gag polyprotein #=GS P16087/136-277 DR GENE3D; a9e797a54392a4f694ca0878daf13dbf/136-277; #=GS P16087/136-277 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS Q68LA9/136-278 AC Q68LA9 #=GS Q68LA9/136-278 OS Feline immunodeficiency virus #=GS Q68LA9/136-278 DE Gag polyprotein #=GS Q68LA9/136-278 DR GENE3D; ab3358e1d3112164b6465bdddd274917/136-278; #=GS Q68LA9/136-278 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS O12140/1-102 AC O12140 #=GS O12140/1-102 OS Feline immunodeficiency virus #=GS O12140/1-102 DE p25 capsid protein #=GS O12140/1-102 DR GENE3D; ac4b5a1eb76cc0914eaad4b6500724e8/1-102; #=GS O12140/1-102 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS D0E7R7/136-277 AC D0E7R7 #=GS D0E7R7/136-277 OS Feline immunodeficiency virus #=GS D0E7R7/136-277 DE Gag polyprotein #=GS D0E7R7/136-277 DR GENE3D; b61ed9afdd2c94b3ff7d5c4c15fa2461/136-277; #=GS D0E7R7/136-277 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS Q8ALF8/23-142 AC Q8ALF8 #=GS Q8ALF8/23-142 OS Feline immunodeficiency virus #=GS Q8ALF8/23-142 DE Capsid #=GS Q8ALF8/23-142 DR GENE3D; d822f77a12529e96ef83201266a4bf5c/23-142; #=GS Q8ALF8/23-142 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS P31821/136-277 AC P31821 #=GS P31821/136-277 OS Feline immunodeficiency virus (isolate TM2) #=GS P31821/136-277 DE Gag polyprotein #=GS P31821/136-277 DR GENE3D; e72da3a6f8e0836381eccf93fdd85446/136-277; #=GS P31821/136-277 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GS Q999X3/1-109 AC Q999X3 #=GS Q999X3/1-109 OS Feline immunodeficiency virus #=GS Q999X3/1-109 DE p24 capsid protein #=GS Q999X3/1-109 DR GENE3D; f5b8822116fbd14d9d149df04a09fe1e/1-109; #=GS Q999X3/1-109 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Feline immunodeficiency virus; #=GF TC 216.2 1.3E-67 #=GF SQ 20 Q6RFG3/1-95 --------PQYVALDPKMVSIFMEKAREGLGGEEVQLWFTTFSANLTSTDMATLIMSAPGCAADKEILDETLKQMTAEYDRTHPPDGPRPLPYFTAAEIMGIG---------------------------------------- Q66968/52-193 PIQTVNGAPQYVALDPKMVSIFMEKAREGLGGEEVQLWFTAFSANLTSTDMATLIMSAPGCAAVKEILDETLKQMTAEYDRTHPPDGPRPLPYFTAAEIMGIGLTQEQQAEPRFAPARMQCRAWYLEALGKLAAIKAKSPRA- A3R3J7/160-301 PIQILNGIPQYVPLNPRMVAIFVEKAREGLGTEEVLLWFTAFSADLTPTDMATILMSAPGCASDKEIIDTKLKELTSEYERTHPSDGPRPLPYFTAREIMGLDLTQDRQAAPHFHPARVQCRAWYLEALQYLMKVKAKSPKA- Q6XPH3/65-172 PIQTVNGAPQYVALDPKMVSIFMEKAREGLGGEEVQLWFTAFSANLTSTDMATLIMSAPGCAADKEILDETLKQMTAEYDRTHPPDGPRPLPYFTAAEIMGIGLTQEQ----------------------------------- P89686/156-297 PIQVVNGQAQYVPLNPRMVAIFMEKARDGLGTEEVLLWFTAFSADLTPTDMATILMSAPGCAADKEIIDTKLKELTTEYERTHPSDAPRPLPYFTAREIMGLDLTQDQQAQPQFHAGRVQARAWYIEALQYLQKIKSRSPRA- Q6XPI0/50-157 PIQTVNGAPQYVALDPKMVSIFMEKAREGLGGEEVQLWFTAFSANLTPTDMATLIMAAPGCAADKEILDESLKQLTAEYDRTHPPDGPRPLPYFTAAEIMGIGLTQTQ----------------------------------- Q6H299/136-245 PIQIVNGAPQYVALDPKMVSIFMEKAREGLGGEEVQLWFTAFSANLTPTDMATLIMAAPGCAADKEILDENLKQLTAEYDRTHPPDGPRPLPYFTAAEIMGIGLTQDNRQ--------------------------------- Q784Z3/47-158 PIQVVNGAPQYVALDPKMVSIFMEKAREGLGGEEVQLWFTAFSANLTPTDMATLIMSAPGCAADKEILDETLKQMTAEYERTHPSDGPRPLPYFTAAEIMGVGLTQEQQAEA------------------------------- Q9W865/47-158 PIQVVNGAPQYVALDPKMVSIFMEKAREGLGGEEVQLWFTAFSANLTPTDMATLIMSAPGCAADKEILDETLKQMTAEYERTHPSDGPRPLPYFTAAEIMGVGLTQEQQAEA------------------------------- Q6XPH2/136-243 PIQTVNGAPQYVALDPKLVSIFMEKAREGLGNEEVQLWFTAFSANLTSTDMATLIMSAPGCAADKEILDETLKQMTAEYDRTHPPDGPRPLPYFTAAEIMGIGLTQEH----------------------------------- Q8ASR2/6-124 ---------------------FMEKAREGLGGEEVQLWFTAFSANLTPTDMATLIMAAPGCAADKEILDESLKQLTAEYDRTHPPDGPRPLPYFTAAEIMGIGLTQEQQAEPRFAPARMQCRAWYLEALGKLAAIKAKSP--- Q8ASR3/6-124 ---------------------FMEKAREGLGGEEVQLWFTAFSANLTPTDMATLIMAAPGCAADKEILDESLKQLTAEYDRTHPPDGPRPLPYFTAAEIMGIGLTQEQQAEPRFAPARMQCRAWYLEALGKLAAIKAKSP--- A0A0B4WUX7/25-166 PIQTVNGAPQYVALDPKMVSIFMEKAREGLGGEEVQLWFTAFSANLTPTDMATLIMAAPGCAADKEILDESLKQLTAEYDRTHPPDGPRPLPYFTAAEIMGIGLTQEQQAEARFAPARMQCRAWYLEALGKLAAIKAKSPRA- P16087/136-277 PIQTVNGVPQYVALDPKMVSIFMEKAREGLGGEEVQLWFTAFSANLTPTDMATLIMAAPGCAADKEILDESLKQLTAEYDRTHPPDAPRPLPYFTAAEIMGIGLTQEQQAEARFAPARMQCRAWYLEALGKLAAIKAKSPRA- Q68LA9/136-278 PIQTINGAPQYVALDPKMVSIFMEKAREGLGGEEVQLWFTAFSANLTSTDMATLIMSAPGCAADKEILDETLKQMTAEYDRTHPPDGPRPLPYFTAAEIMGIGLTQEQQAEPRFAPARMQCRAWYLEALSKLAALKAKSPRAV O12140/1-102 ---------------------------------EDQLWFTAFSGNLTSTDMATLIMSAPGCAADKEILDETLKQMTAEYDRTHPPDGPRPLPYFTAAEIMGIGLTQEQQAEPRFAPARMQCRAWYLEALGKLAAI-------- D0E7R7/136-277 PIQVVNGAPQYVALDPKMVSIFMEKAREGLGGEEVQLWFTAFSANLTPTDMATLIMSAPGCAADKEILDETLKQMTAEYERTHPSDGPRPLPYFTAAEIMGVGLTQEQQAEARFAPARMQCRAWYLEALGKLAAIKAKSPRA- Q8ALF8/23-142 --------------------XWFEKGTKGLRGAVVQLWFTAFSANLTSTDMATLIMSAPGCAADKEILDETLKQMTAEYDRTHPPDGPRPLPYFTAAEIMGIGLTQEQQAEPRFAPARMQCRAWYLEALGKLAAIKAKSP--- P31821/136-277 PIQTVNGAPQYVALDPKMVSIFMEKAREGLGGEEVQLWFTAFSANLTSTDMATLIMSAPGCAADKEILDETLKQMTAEYDRTHPPDGPRPLPYFTAAEIMGIGLTQEQQAEPRFAPARMQCRAWYLEALGKLAAIKAKSPRA- Q999X3/1-109 -IQTVNGAPQYVALDPKMVSIFMEKAREGLGGEEVQLWLTAFSANLTSTDMATLIMSAPGCAADKEILDETLKVLTAEYDRTHPPDGPRPLPYFTAAEIMGIGLTQEQQA--------------------------------- #=GC scorecons 34423442444444444444466777667766687799898998799699999779699999889997975997697997999969799999999979999777776655332322232323333233322322222222000 #=GC scorecons_70 _____________________**********_***************_**********************_*************************************___________________________________ #=GC scorecons_80 _______________________**___**___**************_********_*************_***_*********_*********************_____________________________________ #=GC scorecons_90 _________________________________*__********_**_*****__*_**********_*__**__*_**_****_*_*********_****__________________________________________ //