# STOCKHOLM 1.0
#=GF ID 1.10.1750.10/FF/1642
#=GF DE Chromosomal replication initiator protein DnaA
#=GF AC 1.10.1750.10/FF/1642
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 63.559
#=GS O84252/348-449      AC O84252
#=GS O84252/348-449      OS Chlamydia trachomatis D/UW-3/CX
#=GS O84252/348-449      DE Chromosomal replication initiator protein DnaA 1
#=GS O84252/348-449      DR GENE3D; b573a13b0534d0ea60dda9f122439b61/348-449; 
#=GS O84252/348-449      DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS S7KME5/349-448      AC S7KME5
#=GS S7KME5/349-448      OS Chlamydia psittaci 10_1398_11
#=GS S7KME5/349-448      DE Chromosomal replication initiator protein DnaA
#=GS S7KME5/349-448      DR GENE3D; 2401a5a18f472b082ac3a0a9758c0efa/349-448; 
#=GS S7KME5/349-448      DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia psittaci; 
#=GS T5K7Y3/349-448      AC T5K7Y3
#=GS T5K7Y3/349-448      OS Chlamydia ibidis 10-1398/6
#=GS T5K7Y3/349-448      DE Chromosomal replication initiator protein DnaA
#=GS T5K7Y3/349-448      DR GENE3D; 2401a5a18f472b082ac3a0a9758c0efa/349-448; 
#=GS T5K7Y3/349-448      DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia ibidis; 
#=GS S7IN29/1-85         AC S7IN29
#=GS S7IN29/1-85         OS Chlamydia psittaci 84-8471/1
#=GS S7IN29/1-85         DE IstB-like ATP binding family protein
#=GS S7IN29/1-85         DR GENE3D; 5cd67fdefe731fd9f096b1db1229ed8b/1-85; 
#=GS S7IN29/1-85         DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia psittaci; 
#=GS A0A0H3MD98/348-449  AC A0A0H3MD98
#=GS A0A0H3MD98/348-449  OS Chlamydia trachomatis 434/Bu
#=GS A0A0H3MD98/348-449  DE Chromosomal replication initiator protein DnaA
#=GS A0A0H3MD98/348-449  DR GENE3D; 60b42e488aa2b0dd3ed466612e7f9a4f/348-449; 
#=GS A0A0H3MD98/348-449  DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS A0A0E9FWM3/348-449  AC A0A0E9FWM3
#=GS A0A0E9FWM3/348-449  OS Chlamydia trachomatis
#=GS A0A0E9FWM3/348-449  DE Chromosomal replication initiator protein DnaA
#=GS A0A0E9FWM3/348-449  DR GENE3D; 60b42e488aa2b0dd3ed466612e7f9a4f/348-449; 
#=GS A0A0E9FWM3/348-449  DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS A0A1A9HY88/349-448  AC A0A1A9HY88
#=GS A0A1A9HY88/349-448  OS Chlamydia sp. 2742-308
#=GS A0A1A9HY88/349-448  DE Chromosomal replication initiator protein DnaA
#=GS A0A1A9HY88/349-448  DR GENE3D; 92672ca919d08f3d56fad998975af6f5/349-448; 
#=GS A0A1A9HY88/349-448  DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia sp. 2742-308; 
#=GS V8TN94/348-448      AC V8TN94
#=GS V8TN94/348-448      OS Chlamydia pecorum DBDeUG
#=GS V8TN94/348-448      DE Chromosomal replication initiator protein DnaA
#=GS V8TN94/348-448      DR GENE3D; 9c2584fe0861fd7ed1a4be19657212e5/348-448; 
#=GS V8TN94/348-448      DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia pecorum; 
#=GS G4NP73/348-449      AC G4NP73
#=GS G4NP73/348-449      OS Chlamydia trachomatis A2497
#=GS G4NP73/348-449      DE Chromosomal replication initiator protein DnaA
#=GS G4NP73/348-449      DR GENE3D; b573a13b0534d0ea60dda9f122439b61/348-449; 
#=GS G4NP73/348-449      DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS A0A0E9DCB4/348-449  AC A0A0E9DCB4
#=GS A0A0E9DCB4/348-449  OS Chlamydia trachomatis
#=GS A0A0E9DCB4/348-449  DE Chromosomal replication initiator protein DnaA
#=GS A0A0E9DCB4/348-449  DR GENE3D; b573a13b0534d0ea60dda9f122439b61/348-449; 
#=GS A0A0E9DCB4/348-449  DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS A0A0H2X0R5/348-449  AC A0A0H2X0R5
#=GS A0A0H2X0R5/348-449  OS Chlamydia trachomatis A/HAR-13
#=GS A0A0H2X0R5/348-449  DE Chromosomal replication initiator protein DnaA
#=GS A0A0H2X0R5/348-449  DR GENE3D; b573a13b0534d0ea60dda9f122439b61/348-449; 
#=GS A0A0H2X0R5/348-449  DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS A0A017PJM1/351-445  AC A0A017PJM1
#=GS A0A017PJM1/351-445  OS Bacteroides fragilis str. S6L5
#=GS A0A017PJM1/351-445  DE Chromosomal replication initiator protein DnaA
#=GS A0A017PJM1/351-445  DR GENE3D; c401add5f27862586a22cdd41b528534/351-445; 
#=GS A0A017PJM1/351-445  DR ORG; Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides fragilis; 
#=GS A0A173E013/351-445  AC A0A173E013
#=GS A0A173E013/351-445  OS Chlamydia gallinacea 08-1274/3
#=GS A0A173E013/351-445  DE Chromosomal replication initiator protein DnaA
#=GS A0A173E013/351-445  DR GENE3D; c401add5f27862586a22cdd41b528534/351-445; 
#=GS A0A173E013/351-445  DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia gallinacea; 
#=GS A0A0F7XPW3/349-448  AC A0A0F7XPW3
#=GS A0A0F7XPW3/349-448  OS Chlamydia pneumoniae
#=GS A0A0F7XPW3/349-448  DE Chromosomal replication initiator protein DnaA
#=GS A0A0F7XPW3/349-448  DR GENE3D; d634862e4df73821afc394cd98153b09/349-448; 
#=GS A0A0F7XPW3/349-448  DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia pneumoniae; 
#=GS Q9Z8M9/349-448      AC Q9Z8M9
#=GS Q9Z8M9/349-448      OS Chlamydia pneumoniae
#=GS Q9Z8M9/349-448      DE Chromosomal replication initiator protein DnaA 1
#=GS Q9Z8M9/349-448      DR GENE3D; d634862e4df73821afc394cd98153b09/349-448; 
#=GS Q9Z8M9/349-448      DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia pneumoniae; 
#=GS Q823E6/349-448      AC Q823E6
#=GS Q823E6/349-448      OS Chlamydophila caviae GPIC
#=GS Q823E6/349-448      DE Chromosomal replication initiator protein DnaA 2
#=GS Q823E6/349-448      DR GENE3D; eaccf471da6205bc9d63ad4091c657a6/349-448; 
#=GS Q823E6/349-448      DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia caviae; 
#=GS W8JG67/349-447      AC W8JG67
#=GS W8JG67/349-447      OS Chlamydia avium 10DC88
#=GS W8JG67/349-447      DE Chromosomal replication initiator protein DnaA
#=GS W8JG67/349-447      DR GENE3D; ef694e090e3585e953fa5231338026c4/349-447; 
#=GS W8JG67/349-447      DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia avium; 
#=GF TC 172.6 4.4E-55
#=GF SQ 17
O84252/348-449              SIRLTPSGIVRATAQYYGVSPESVLGRSQSREYVLPRQVAMFLCRQKLSLSYVKIGEVFSRDHSTVISSIRAISQKLEEDDRECDVSRAIQELTKRLSSAYQ-
S7KME5/349-448              NVRLTHTGIIRAVAQYYNVSPESILGRSQSREYVLPRQVAMYLCREKLSLSYVRIGDIFSRDHSTVISSIRLVSQKIENRNS--AISIAIQDLMKQLTSSYK-
T5K7Y3/349-448              NVRLTHTGIIRAVAQYYNVSPESILGRSQSREYVLPRQVAMYLCREKLSLSYVRIGDIFSRDHSTVISSIRLVSQKIENRNS--AISIAIQDLMKQLTSSYK-
S7IN29/1-85                 --------IVRAVAKYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVRIGDVFSRDHSTVISSIRAISQKVEEGGH--DISIATQDLMK--------
A0A0H3MD98/348-449          SIRLTPSGIVRATAQYYGVSPESVLGRSQSREYVLPRQVAMFLCRQKLSLSYVKIGEVFSRDHSTVISSIRAISQKLEEDDRECDVSCAIQELTKRLSSAYQ-
A0A0E9FWM3/348-449          SIRLTPSGIVRATAQYYGVSPESVLGRSQSREYVLPRQVAMFLCRQKLSLSYVKIGEVFSRDHSTVISSIRAISQKLEEDDRECDVSCAIQELTKRLSSAYQ-
A0A1A9HY88/349-448          SVRLTPSGIIRAVAQYYSVTQESILGRSQSREYVIPRQIAMYLCRQKLSLSYAKIGDIFSRDHSTVISSIRLIAQKYEKNNN--DTTIAIQDISKHLISIQK-
V8TN94/348-448              SVRLTPNGIIRAVSRYYGVTQESILGRSQSREYVLPRQIAMYLCRQKLALSFVRIGDIFSRDHSTVISSIRLIAQKVENVGN--DVHIAVQDISKHLTAANKS
G4NP73/348-449              SIRLTPSGIVRATAQYYGVSPESVLGRSQSREYVLPRQVAMFLCRQKLSLSYVKIGEVFSRDHSTVISSIRAISQKLEEDDRECDVSRAIQELTKRLSSAYQ-
A0A0E9DCB4/348-449          SIRLTPSGIVRATAQYYGVSPESVLGRSQSREYVLPRQVAMFLCRQKLSLSYVKIGEVFSRDHSTVISSIRAISQKLEEDDRECDVSRAIQELTKRLSSAYQ-
A0A0H2X0R5/348-449          SIRLTPSGIVRATAQYYGVSPESVLGRSQSREYVLPRQVAMFLCRQKLSLSYVKIGEVFSRDHSTVISSIRAISQKLEEDDRECDVSRAIQELTKRLSSAYQ-
A0A017PJM1/351-445          --RLTPLGVVRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQRLSLSYVRIGNIFSRDHSTVIASIRTVAQKVEGGDR--DISIATKDLMKIFTS----
A0A173E013/351-445          --RLTPLGVVRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQRLSLSYVRIGNIFSRDHSTVIASIRTVAQKVEGGDR--DISIATKDLMKIFTS----
A0A0F7XPW3/349-448          SVRLTPLKIIRNVAQYYGVSQESILGRSQSREYVLPRQVAMYFCRQKLSLSYVRIGDVFSRDHSTVISSIRLIEQKIEENSH--DIHMAIQDISKNLNSLHK-
Q9Z8M9/349-448              SVRLTPLKIIRNVAQYYGVSQESILGRSQSREYVLPRQVAMYFCRQKLSLSYVRIGDVFSRDHSTVISSIRLIEQKIEENSH--DIHMAIQDISKNLNSLHK-
Q823E6/349-448              SVRLTPSGIVRAVAKYYGVSPESILGRSQSREYVLPRQVSMYLCRQKLSLSYVRIGDVFSRDHSTVISSIRAISQKVEEGGD--DISIATQELMKSLTSAYK-
W8JG67/349-447              SVRLTPLGIVRAVAQYYGVSPESILGRSQSREYVVPRQVAMYLCRQKLSLSYVRIGNVFSRDHSTVISSIRTVSQKIEEGGL--DISIATKDLMKTLSSAY--
#=GC scorecons              4477763687976879979769979999999999799988977997898998879967999999999799947599595444007664967774936463330
#=GC scorecons_70           __***___************************************************_**************_*_**_*______**__*_***_*_*_*____
#=GC scorecons_80           __***___*_**_****_**_***********************************__*************_*_**_*______*___*_**__*________
#=GC scorecons_90           ________*_*__*_**_*__**_**********_***_**__**_*******_**__*********_***___**_*__________*_____*________
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