# STOCKHOLM 1.0
#=GF ID 1.10.1740.10/FF/641
#=GF DE RNA polymerase sigma factor SigM
#=GF AC 1.10.1740.10/FF/641
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 1.062
#=GS O53590/15-127      AC O53590
#=GS O53590/15-127      OS Mycobacterium tuberculosis H37Rv
#=GS O53590/15-127      DE ECF RNA polymerase sigma factor SigM
#=GS O53590/15-127      DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/15-127; 
#=GS O53590/15-127      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS O53590/15-127      DR GO; GO:0005886; GO:0009410; GO:0009415; GO:0045893; 
#=GS A0A0K2I2Y3/15-127  AC A0A0K2I2Y3
#=GS A0A0K2I2Y3/15-127  OS Mycobacterium bovis BCG
#=GS A0A0K2I2Y3/15-127  DE ECF RNA polymerase sigma factor SigM
#=GS A0A0K2I2Y3/15-127  DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/15-127; 
#=GS A0A0K2I2Y3/15-127  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium bovis; 
#=GS A0A045KCY9/15-127  AC A0A045KCY9
#=GS A0A045KCY9/15-127  OS Mycobacterium tuberculosis
#=GS A0A045KCY9/15-127  DE RNA polymerase alternative sigma factor sigM
#=GS A0A045KCY9/15-127  DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/15-127; 
#=GS A0A045KCY9/15-127  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS M8CTQ2/15-127      AC M8CTQ2
#=GS M8CTQ2/15-127      OS Mycobacterium orygis 112400015
#=GS M8CTQ2/15-127      DE RNA polymerase sigma factor SigM
#=GS M8CTQ2/15-127      DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/15-127; 
#=GS M8CTQ2/15-127      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium orygis; 
#=GS A0A1A9EDZ6/15-127  AC A0A1A9EDZ6
#=GS A0A1A9EDZ6/15-127  OS Mycobacterium bovis
#=GS A0A1A9EDZ6/15-127  DE ECF RNA polymerase sigma factor SigM
#=GS A0A1A9EDZ6/15-127  DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/15-127; 
#=GS A0A1A9EDZ6/15-127  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium bovis; 
#=GS A0A0G2PF27/15-127  AC A0A0G2PF27
#=GS A0A0G2PF27/15-127  OS Mycobacterium bovis BCG str. Pasteur 1173P2
#=GS A0A0G2PF27/15-127  DE Possible alternative RNA polymerase sigma factor sigMa [first part]
#=GS A0A0G2PF27/15-127  DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/15-127; 
#=GS A0A0G2PF27/15-127  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium bovis; 
#=GS A0A120J3N8/15-127  AC A0A120J3N8
#=GS A0A120J3N8/15-127  OS Mycobacterium africanum
#=GS A0A120J3N8/15-127  DE ECF RNA polymerase sigma factor SigM
#=GS A0A120J3N8/15-127  DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/15-127; 
#=GS A0A120J3N8/15-127  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium africanum; 
#=GS A5U9N9/15-127      AC A5U9N9
#=GS A5U9N9/15-127      OS Mycobacterium tuberculosis H37Ra
#=GS A5U9N9/15-127      DE RNA polymerase sigma-70 factor
#=GS A5U9N9/15-127      DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/15-127; 
#=GS A5U9N9/15-127      DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GS A0A109SSU3/15-127  AC A0A109SSU3
#=GS A0A109SSU3/15-127  OS Mycobacterium microti
#=GS A0A109SSU3/15-127  DE ECF RNA polymerase sigma factor SigM
#=GS A0A109SSU3/15-127  DR GENE3D; 1a23de725ebb903b57059e5b5a6433ce/15-127; 
#=GS A0A109SSU3/15-127  DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium microti; 
#=GS R4M8L2/5-118       AC R4M8L2
#=GS R4M8L2/5-118       OS Mycobacterium tuberculosis str. Haarlem/NITR202
#=GS R4M8L2/5-118       DE RNA polymerase sigma factor SigM
#=GS R4M8L2/5-118       DR GENE3D; 0e44fc6266675c0925b6eb8f4240044f/5-118; 
#=GS R4M8L2/5-118       DR ORG; Bacteria; Actinobacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; 
#=GF TC 255.4 9.3E-81
#=GF SQ 10
O53590/15-127              GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVET-
A0A0K2I2Y3/15-127          GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVET-
A0A045KCY9/15-127          GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVET-
M8CTQ2/15-127              GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVET-
A0A1A9EDZ6/15-127          GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVET-
A0A0G2PF27/15-127          GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVET-
A0A120J3N8/15-127          GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVET-
A5U9N9/15-127              GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVET-
A0A109SSU3/15-127          GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVET-
R4M8L2/5-118               GRHERSDAELLAAHVAGDRYAFDQLFRRHHRQLHRLARLTSRTSEDADDALQDAMLSAHRGAGSFRYDAAVSSWLHRIVVNACLDRLRRAKAHPTAPLEDVYPVADRTAQVETA
#=GC scorecons             999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999990
#=GC scorecons_70          *****************************************************************************************************************_
#=GC scorecons_80          *****************************************************************************************************************_
#=GC scorecons_90          *****************************************************************************************************************_
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