# STOCKHOLM 1.0
#=GF ID 1.10.1740.10/FF/14694
#=GF DE Flagellar-specific transcription initiation factor sigma, LafS
#=GF AC 1.10.1740.10/FF/14694
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 9.103
#=GS A8SZB5/12-98      AC A8SZB5
#=GS A8SZB5/12-98      OS Vibrio sp. AND4
#=GS A8SZB5/12-98      DE Flagellar-specific transcription initiation factor sigma, LafS
#=GS A8SZB5/12-98      DR GENE3D; d62d3d234656ec6704bd4bb04fc86886/12-98; 
#=GS A8SZB5/12-98      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio sp. AND4; 
#=GS A0A0F6LK12/14-98  AC A0A0F6LK12
#=GS A0A0F6LK12/14-98  OS Vibrio parahaemolyticus 863
#=GS A0A0F6LK12/14-98  DE RNA polymerase sigma factor
#=GS A0A0F6LK12/14-98  DR GENE3D; afc2393bbd57818cc0613b4904762af8/14-98; 
#=GS A0A0F6LK12/14-98  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio parahaemolyticus; 
#=GS A0A0D1GQR1/14-98  AC A0A0D1GQR1
#=GS A0A0D1GQR1/14-98  OS Vibrio parahaemolyticus 901128
#=GS A0A0D1GQR1/14-98  DE Whole genome shotgun sequence
#=GS A0A0D1GQR1/14-98  DR GENE3D; afc2393bbd57818cc0613b4904762af8/14-98; 
#=GS A0A0D1GQR1/14-98  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio parahaemolyticus; 
#=GS Z2EH84/14-98      AC Z2EH84
#=GS Z2EH84/14-98      OS Vibrio parahaemolyticus V-223/04
#=GS Z2EH84/14-98      DE RNA polymerase sigma factor, FliA/WhiG family protein
#=GS Z2EH84/14-98      DR GENE3D; afc2393bbd57818cc0613b4904762af8/14-98; 
#=GS Z2EH84/14-98      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio parahaemolyticus; 
#=GS A0A0D1FBJ1/14-98  AC A0A0D1FBJ1
#=GS A0A0D1FBJ1/14-98  OS Vibrio parahaemolyticus VP766
#=GS A0A0D1FBJ1/14-98  DE Whole genome shotgun sequence
#=GS A0A0D1FBJ1/14-98  DR GENE3D; afc2393bbd57818cc0613b4904762af8/14-98; 
#=GS A0A0D1FBJ1/14-98  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio parahaemolyticus; 
#=GS Q03474/14-98      AC Q03474
#=GS Q03474/14-98      OS Vibrio parahaemolyticus RIMD 2210633
#=GS Q03474/14-98      DE RNA polymerase sigma factor for flagellar operon
#=GS Q03474/14-98      DR GENE3D; afc2393bbd57818cc0613b4904762af8/14-98; 
#=GS Q03474/14-98      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio parahaemolyticus; 
#=GS A0A072K6C6/14-98  AC A0A072K6C6
#=GS A0A072K6C6/14-98  OS Vibrio parahaemolyticus
#=GS A0A072K6C6/14-98  DE RNA polymerase sigma factor
#=GS A0A072K6C6/14-98  DR GENE3D; afc2393bbd57818cc0613b4904762af8/14-98; 
#=GS A0A072K6C6/14-98  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio parahaemolyticus; 
#=GS A6AWU2/14-98      AC A6AWU2
#=GS A6AWU2/14-98      OS Vibrio parahaemolyticus AQ3810
#=GS A6AWU2/14-98      DE RNA polymerase sigma factor for flagellar operon
#=GS A6AWU2/14-98      DR GENE3D; afc2393bbd57818cc0613b4904762af8/14-98; 
#=GS A6AWU2/14-98      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio parahaemolyticus; 
#=GF TC 199.7 5.3E-64
#=GF SQ 8
A8SZB5/12-98              QEEEVNTPSRAIDENALLQRHQIMVKRVVNQLRAHATSHCSIEDMQQIGLIALVEAGRRYGEVDDPHFPAFAVCRVRGAILDELRRL
A0A0F6LK12/14-98          --EEVNTPSRPIDENALLQRHQVMVKRVVNQLRVHATSHCSIEDMQQIGLIALVEAGRRYGDIDDTHFPAFAVCRVRGAILDELRRL
A0A0D1GQR1/14-98          --EEVNTPSRPIDENALLQRHQVMVKRVVNQLRVHATSHCSIEDMQQIGLIALVEAGRRYGDIDDTHFPAFAVCRVRGAILDELRRL
Z2EH84/14-98              --EEVNTPSRPIDENALLQRHQVMVKRVVNQLRVHATSHCSIEDMQQIGLIALVEAGRRYGDIDDTHFPAFAVCRVRGAILDELRRL
A0A0D1FBJ1/14-98          --EEVNTPSRPIDENALLQRHQVMVKRVVNQLRVHATSHCSIEDMQQIGLIALVEAGRRYGDIDDTHFPAFAVCRVRGAILDELRRL
Q03474/14-98              --EEVNTPSRPIDENALLQRHQVMVKRVVNQLRVHATSHCSIEDMQQIGLIALVEAGRRYGDIDDTHFPAFAVCRVRGAILDELRRL
A0A072K6C6/14-98          --EEVNTPSRPIDENALLQRHQVMVKRVVNQLRVHATSHCSIEDMQQIGLIALVEAGRRYGDIDDTHFPAFAVCRVRGAILDELRRL
A6AWU2/14-98              --EEVNTPSRPIDENALLQRHQVMVKRVVNQLRVHATSHCSIEDMQQIGLIALVEAGRRYGDIDDTHFPAFAVCRVRGAILDELRRL
#=GC scorecons            009999999959999999999969999999999599999999999999999999999999966995999999999999999999999
#=GC scorecons_70         __********_**********************_*******************************_*********************
#=GC scorecons_80         __********_***********_**********_***************************__**_*********************
#=GC scorecons_90         __********_***********_**********_***************************__**_*********************
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