# STOCKHOLM 1.0
#=GF ID 1.10.1740.10/FF/14148
#=GF DE RNA polymerase sigma factor
#=GF AC 1.10.1740.10/FF/14148
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 7.546
#=GS A3F488/1-71      AC A3F488
#=GS A3F488/1-71      OS Bacillus subtilis subsp. subtilis str. 168
#=GS A3F488/1-71      DE RNA polymerase sigma factor
#=GS A3F488/1-71      DR GENE3D; 1bd69961114db276bc1a754a8b973b13/1-71; 
#=GS A3F488/1-71      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; Bacillus subtilis subsp. subtilis; 
#=GS P35165/1-71      AC P35165
#=GS P35165/1-71      OS Bacillus subtilis subsp. subtilis str. 168
#=GS P35165/1-71      DE ECF RNA polymerase sigma factor SigX
#=GS P35165/1-71      DR GENE3D; 1bd69961114db276bc1a754a8b973b13/1-71; 
#=GS P35165/1-71      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; Bacillus subtilis subsp. subtilis; 
#=GS A0A1A5VDM3/1-71  AC A0A1A5VDM3
#=GS A0A1A5VDM3/1-71  OS Bacillus amyloliquefaciens
#=GS A0A1A5VDM3/1-71  DE RNA polymerase sigma factor
#=GS A0A1A5VDM3/1-71  DR GENE3D; 98f57232db2c2c51d44a1a6787e948b3/1-71; 
#=GS A0A1A5VDM3/1-71  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus amyloliquefaciens group; Bacillus amyloliquefaciens; 
#=GS E1UK57/1-71      AC E1UK57
#=GS E1UK57/1-71      OS Bacillus amyloliquefaciens DSM 7
#=GS E1UK57/1-71      DE RNA polymerase sigma factor
#=GS E1UK57/1-71      DR GENE3D; 98f57232db2c2c51d44a1a6787e948b3/1-71; 
#=GS E1UK57/1-71      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus amyloliquefaciens group; Bacillus amyloliquefaciens; 
#=GS A0A0A0TWN0/1-71  AC A0A0A0TWN0
#=GS A0A0A0TWN0/1-71  OS Bacillus subtilis
#=GS A0A0A0TWN0/1-71  DE RNA polymerase sigma factor
#=GS A0A0A0TWN0/1-71  DR GENE3D; 98f57232db2c2c51d44a1a6787e948b3/1-71; 
#=GS A0A0A0TWN0/1-71  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; 
#=GS A0A125UJL1/1-71  AC A0A125UJL1
#=GS A0A125UJL1/1-71  OS Bacillus sp. LM 4-2
#=GS A0A125UJL1/1-71  DE RNA polymerase sigma factor
#=GS A0A125UJL1/1-71  DR GENE3D; 1bd69961114db276bc1a754a8b973b13/1-71; 
#=GS A0A125UJL1/1-71  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus sp. LM 4-2; 
#=GS M4KUI2/1-71      AC M4KUI2
#=GS M4KUI2/1-71      OS Bacillus subtilis XF-1
#=GS M4KUI2/1-71      DE RNA polymerase sigma factor
#=GS M4KUI2/1-71      DR GENE3D; 1bd69961114db276bc1a754a8b973b13/1-71; 
#=GS M4KUI2/1-71      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; 
#=GS D4FY82/1-71      AC D4FY82
#=GS D4FY82/1-71      OS Bacillus subtilis subsp. natto BEST195
#=GS D4FY82/1-71      DE RNA polymerase sigma factor
#=GS D4FY82/1-71      DR GENE3D; 1bd69961114db276bc1a754a8b973b13/1-71; 
#=GS D4FY82/1-71      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; Bacillus subtilis subsp. natto; 
#=GS A0A199WLP1/1-71  AC A0A199WLP1
#=GS A0A199WLP1/1-71  OS Bacillus subtilis subsp. subtilis
#=GS A0A199WLP1/1-71  DE RNA polymerase sigma factor
#=GS A0A199WLP1/1-71  DR GENE3D; 1bd69961114db276bc1a754a8b973b13/1-71; 
#=GS A0A199WLP1/1-71  DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; Bacillus subtilis subsp. subtilis; 
#=GS A3F493/1-71      AC A3F493
#=GS A3F493/1-71      OS Bacillus subtilis
#=GS A3F493/1-71      DE RNA polymerase sigma factor
#=GS A3F493/1-71      DR GENE3D; 1bd69961114db276bc1a754a8b973b13/1-71; 
#=GS A3F493/1-71      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; 
#=GS L8AJH8/1-71      AC L8AJH8
#=GS L8AJH8/1-71      OS Bacillus subtilis BEST7613
#=GS L8AJH8/1-71      DE RNA polymerase sigma factor
#=GS L8AJH8/1-71      DR GENE3D; 1bd69961114db276bc1a754a8b973b13/1-71; 
#=GS L8AJH8/1-71      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; 
#=GS U2AHK5/1-71      AC U2AHK5
#=GS U2AHK5/1-71      OS Bacillus sp. EGD-AK10
#=GS U2AHK5/1-71      DE RNA polymerase sigma factor
#=GS U2AHK5/1-71      DR GENE3D; 1bd69961114db276bc1a754a8b973b13/1-71; 
#=GS U2AHK5/1-71      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus sp. EGD-AK10; 
#=GS A3F489/1-71      AC A3F489
#=GS A3F489/1-71      OS Bacillus subtilis subsp. subtilis str. NCIB 3610
#=GS A3F489/1-71      DE RNA polymerase sigma factor
#=GS A3F489/1-71      DR GENE3D; 1bd69961114db276bc1a754a8b973b13/1-71; 
#=GS A3F489/1-71      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; Bacillus subtilis subsp. subtilis; 
#=GS A3F496/1-71      AC A3F496
#=GS A3F496/1-71      OS Bacillus subtilis subsp. subtilis str. SMY
#=GS A3F496/1-71      DE RNA polymerase sigma factor
#=GS A3F496/1-71      DR GENE3D; 1bd69961114db276bc1a754a8b973b13/1-71; 
#=GS A3F496/1-71      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; Bacillus subtilis subsp. subtilis; 
#=GS A0A0T8PSY5/1-71  AC A0A0T8PSY5
#=GS A0A0T8PSY5/1-71  OS Streptococcus pneumoniae
#=GS A0A0T8PSY5/1-71  DE RNA polymerase sigma factor
#=GS A0A0T8PSY5/1-71  DR GENE3D; 1bd69961114db276bc1a754a8b973b13/1-71; 
#=GS A0A0T8PSY5/1-71  DR ORG; Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pneumoniae; 
#=GS G4EUC3/1-71      AC G4EUC3
#=GS G4EUC3/1-71      OS Bacillus subtilis subsp. subtilis str. SC-8
#=GS G4EUC3/1-71      DE RNA polymerase sigma factor
#=GS G4EUC3/1-71      DR GENE3D; 1bd69961114db276bc1a754a8b973b13/1-71; 
#=GS G4EUC3/1-71      DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; Bacillus subtilis subsp. subtilis; 
#=GF TC 176.6 8.6E-57
#=GF SQ 16
A3F488/1-71              MEETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR
P35165/1-71              MEETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR
A0A1A5VDM3/1-71          MEETFQILYDAYHQDLYQFLFYMVKDKTQAEDLAQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR
E1UK57/1-71              MEETFQILYDAYHQDLYQFLFYMVKDKTQAEDLAQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR
A0A0A0TWN0/1-71          MEETFQILYDAYHQDLYQFLFYMVKDKTQAEDLAQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR
A0A125UJL1/1-71          MEETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR
M4KUI2/1-71              MEETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR
D4FY82/1-71              MEETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR
A0A199WLP1/1-71          MEETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR
A3F493/1-71              MEETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR
L8AJH8/1-71              MEETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR
U2AHK5/1-71              MEETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR
A3F489/1-71              MEETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR
A3F496/1-71              MEETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR
A0A0T8PSY5/1-71          MEETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR
G4EUC3/1-71              MEETFQLLYDTYHQDLYQFLFYMVKDKNQTEDLLQEVYIRVLNSYHTFEGRSSEKTWLLSIARHVAIDWFR
#=GC scorecons           99999969996999999999999999959699959999999999999999999999999999999999999
#=GC scorecons_70        ***************************_*****_*************************************
#=GC scorecons_80        ******_***_****************_*_***_*************************************
#=GC scorecons_90        ******_***_****************_*_***_*************************************
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