# STOCKHOLM 1.0
#=GF ID 1.10.150.90/FF/3718
#=GF DE Gag polyprotein
#=GF AC 1.10.150.90/FF/3718
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 50.440
#=GS Q1W387/5-130   AC Q1W387
#=GS Q1W387/5-130   OS Caprine arthritis encephalitis virus
#=GS Q1W387/5-130   DE Gag protein
#=GS Q1W387/5-130   DR GENE3D; 1695fcc32bc6d1a81c0491e6a30db0a2/5-130; 
#=GS Q1W387/5-130   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; 
#=GS P03352/7-137   AC P03352
#=GS P03352/7-137   OS Visna lentivirus (strain 1514)
#=GS P03352/7-137   DE Gag polyprotein
#=GS P03352/7-137   DR GENE3D; 18de28b5cb867b9b993bb113599eaccb/7-137; 
#=GS P03352/7-137   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Visna/maedi virus; 
#=GS H6TKJ0/8-137   AC H6TKJ0
#=GS H6TKJ0/8-137   OS Small ruminant lentivirus
#=GS H6TKJ0/8-137   DE Gag protein
#=GS H6TKJ0/8-137   DR GENE3D; 2793ff1ac68fd447c0eb5035bd7a8f2d/8-137; 
#=GS H6TKJ0/8-137   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; 
#=GS W0BZB1/11-144  AC W0BZB1
#=GS W0BZB1/11-144  OS Small ruminant lentivirus
#=GS W0BZB1/11-144  DE Gag polyprotein
#=GS W0BZB1/11-144  DR GENE3D; 2f799c1ab7b6be9d4a9631453050fdc8/11-144; 
#=GS W0BZB1/11-144  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; 
#=GS A8TCG4/5-137   AC A8TCG4
#=GS A8TCG4/5-137   OS Small ruminant lentivirus
#=GS A8TCG4/5-137   DE Gag protein
#=GS A8TCG4/5-137   DR GENE3D; 35e822df1d2b1395b1e61b935c51359d/5-137; 
#=GS A8TCG4/5-137   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; 
#=GS Q6H1V6/9-135   AC Q6H1V6
#=GS Q6H1V6/9-135   OS Small ruminant lentivirus
#=GS Q6H1V6/9-135   DE Gag polyprotein
#=GS Q6H1V6/9-135   DR GENE3D; 423b00e000c4ffe17641a032a7eea08c/9-135; 
#=GS Q6H1V6/9-135   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; 
#=GS F2YGD9/4-129   AC F2YGD9
#=GS F2YGD9/4-129   OS Small ruminant lentivirus
#=GS F2YGD9/4-129   DE Matrix protein
#=GS F2YGD9/4-129   DR GENE3D; 5fb24bfe9f709b5ab27ebc7fea4d9092/4-129; 
#=GS F2YGD9/4-129   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; 
#=GS I2CJ32/5-130   AC I2CJ32
#=GS I2CJ32/5-130   OS Small ruminant lentivirus
#=GS I2CJ32/5-130   DE Matrix protein
#=GS I2CJ32/5-130   DR GENE3D; 7dde7aa7b1d0d332b1c7149958e4ec3f/5-130; 
#=GS I2CJ32/5-130   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; 
#=GS I2CJ19/4-131   AC I2CJ19
#=GS I2CJ19/4-131   OS Small ruminant lentivirus
#=GS I2CJ19/4-131   DE Matrix protein
#=GS I2CJ19/4-131   DR GENE3D; 9894f3dcd371987327c2d6005c6f33b2/4-131; 
#=GS I2CJ19/4-131   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; 
#=GS H6TKJ1/7-135   AC H6TKJ1
#=GS H6TKJ1/7-135   OS Small ruminant lentivirus
#=GS H6TKJ1/7-135   DE Gag protein
#=GS H6TKJ1/7-135   DR GENE3D; b3708ef875be44a1a6b3f9c6149ac3ea/7-135; 
#=GS H6TKJ1/7-135   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Caprine arthritis encephalitis virus; 
#=GS Q6WXQ3/10-140  AC Q6WXQ3
#=GS Q6WXQ3/10-140  OS Ovine lentivirus
#=GS Q6WXQ3/10-140  DE Gag polyprotein
#=GS Q6WXQ3/10-140  DR GENE3D; ec9eaaef7d0a64ef87fa1a9afb70857d/10-140; 
#=GS Q6WXQ3/10-140  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Lentivirus; Ovine lentivirus; 
#=GF TC 254.5 8.6E-80
#=GF SQ 11
Q1W387/5-130           ---VS-KEKKGYPELKDVIKATCKIKVGAGKETLTEGNCLWALKAIDFIFEDIKTEPWTLTKMYTIWGRLKQLTPEETSKREFTSLIATLACMMCSQMGMKPETVQAAQGIISMKEGLQENKEEK--HKVEQ--------
P03352/7-137           ------KEKKGYPELKEVIKATCKIRVGPGKETLTEGNCLWALKTIDFIFEDLKTEPWTITKMYTVWDRLKGLTPEETSKREFASLQATLACIMCSQMGMKPETVQAAKGIISMKEGLHENKEAK-GEKVEQLYPNLE--
H6TKJ0/8-137           -------EKKGYPELKEVIKTTCKIKIGPGKETLTEGNCLWALKTVDFIFEDIKEEPWTLTKMYTVWGRLKKLTPEETSKREFASLQATMACLMCSLMGMKPETVQAARGIMSMKEGLQETKEEK-EEKVEQLYPNLE--
W0BZB1/11-144          AKQGS-KEKKGYPELKEVIKMTCKIXVGPGKETLTEGNCLWALKTVDFIFEDLKTEPWTLTKMYTVWDRLKQLTPEETSKREFASLQATMACLMCSQMGMKPETVQAARGIISMKEGLQESKEEK-EKKVEQLYPN----
A8TCG4/5-137           ---GSREGKKGYPELKEAIKATCKIRVGAGKETLTEGNCLWALKTIGFIFEDIAAEPWTLTKMYAVWGRLKQLTPEETSKREFASLQATLACVMCSQMGMKPETVQAARGIIGMKEGLQENKEAA-EKKVEQLYPNV---
Q6H1V6/9-135           --------KKGYPELKEVIKATCKIKVGPGKETLTEGNCLWALKTVDFIFEDISTEPWTLTKMYTVWERLKQLTPEETSKREFASLQATLACLICSQRGMKPETVQAARGIIGMREGLQEAEKDK-DKKVEQLYPS----
F2YGD9/4-129           --------KKGYPELKEVIKATCKIRIGAGKETLTEGNCLWALKTVDFIFEDLQSEPWTRTKMYTVWERLKQVTPEETSKREFASLQATLACLMCSQMGMKPETVQAARSIIGMKEGLHEQKEAV-EKKVEQLYP-----
I2CJ32/5-130           ---------KGYPELKDVIKATCRIKVGAGKETLTEGNCLWALKTVDFIFEDLKGEPWTITKMYTVWERLKQLTPEETSKREFAALKTTVACLMCSQMGMKPETVQAARGIMSMKEGLQESKEEK-EKKVEQLYPN----
I2CJ19/4-131           --------KKGYPELKEVIKATCKIRVGPGKETLTEGNCLWALKTVDFIFEDLKEEPWTITKMYTVWERIKQLTPEETSKREFASLQATMACIMCSQMGMRPETMQAARGIIGMKEGLQESKEEK-EKKVEQLYPNL---
H6TKJ1/7-135           ------KEKKGYPELKEVIKATCKIRVGPGKETLTEGNCLWALKTIDFIFEDLKTEPWTITKMYTVWDRLKGLTPEETSKREFASLQATLACIMCSQMGMKPETVQAAKGIISMKEGLHENKEAK-GEKVEQLYPN----
Q6WXQ3/10-140          ---------KGYPELRDVIKMTCKIKVGPGKETLTEGNCLWALKTTDFIFEDIKTEPWTITKMYTVWGRLKNLTPEETSKREFASLQATLACLMCSQMGMKPETVQAARGIIEMKEGIQEKKTSENADKMERLYPNLEEY
#=GC scorecons         00000011599999987799599895796999999999999999767999996549999599998895989589999999999789689699589977998999899978975989977948645045979777741000
#=GC scorecons_70      _________***********_****_**_****************_*******__****_*******_***_********************_*******************_*******_**_____*******_____
#=GC scorecons_80      _________***********_****_**_****************_******___****_*******_***_**************_**_**_***************_***_*******_*______****________
#=GC scorecons_90      _________*******__**_****__*_***************___*****___****_****_**_***_***********__*_**_**_***__**********__*__****__*________*_*_________
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