# STOCKHOLM 1.0 #=GF ID 1.10.150.20/FF/26350 #=GF DE DNA repair and recombination protein RadA #=GF AC 1.10.150.20/FF/26350 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 86.251 #=GS 1pznA01/35-100 AC O74036 #=GS 1pznA01/35-100 OS Pyrococcus furiosus DSM 3638 #=GS 1pznA01/35-100 DE DNA repair and recombination protein RadA #=GS 1pznA01/35-100 DR CATH; 1pzn; A:35-100; #=GS 1pznA01/35-100 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus; Pyrococcus furiosus; #=GS O58001/43-106 AC O58001 #=GS O58001/43-106 OS Pyrococcus horikoshii OT3 #=GS O58001/43-106 DE DNA repair and recombination protein RadA #=GS O58001/43-106 DR GENE3D; 464e8892707b735152268c497cbb27c8/43-106; #=GS O58001/43-106 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus; Pyrococcus horikoshii; #=GS O29269/1-71 AC O29269 #=GS O29269/1-71 OS Archaeoglobus fulgidus DSM 4304 #=GS O29269/1-71 DE DNA repair and recombination protein RadA #=GS O29269/1-71 DR GENE3D; bb0068bececf2fecf2285c266fbc190d/1-71; #=GS O29269/1-71 DR ORG; Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus; Archaeoglobus fulgidus; #=GS L0HAP6/7-69 AC L0HAP6 #=GS L0HAP6/7-69 OS Methanoregula formicica SMSP #=GS L0HAP6/7-69 DE DNA repair and recombination protein RadA #=GS L0HAP6/7-69 DR GENE3D; 27ce7e78df105911cb741f76fdfb0551/7-69; #=GS L0HAP6/7-69 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula; Methanoregula formicica; #=GS F8AHL2/40-103 AC F8AHL2 #=GS F8AHL2/40-103 OS Pyrococcus yayanosii CH1 #=GS F8AHL2/40-103 DE DNA repair and recombination protein RadA #=GS F8AHL2/40-103 DR GENE3D; 42f033ce04c9a5dedc0e0767e28a3fc9/40-103; #=GS F8AHL2/40-103 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus; Pyrococcus yayanosii; #=GS I7LIX1/5-67 AC I7LIX1 #=GS I7LIX1/5-67 OS Methanoculleus bourgensis MS2 #=GS I7LIX1/5-67 DE DNA repair and recombination protein RadA #=GS I7LIX1/5-67 DR GENE3D; 728808e8e1151559d606a6f9c7ef62f4/5-67; #=GS I7LIX1/5-67 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanoculleus; Methanoculleus bourgensis; #=GS T0N1N3/1-71 AC T0N1N3 #=GS T0N1N3/1-71 OS Thermoplasmatales archaeon E-plasma #=GS T0N1N3/1-71 DE DNA repair and recombination protein RadA #=GS T0N1N3/1-71 DR GENE3D; 784074fd7fd916804a31fb87b79c2b68/1-71; #=GS T0N1N3/1-71 DR ORG; Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Thermoplasmatales archaeon E-plasma; #=GS J0SAV3/7-69 AC J0SAV3 #=GS J0SAV3/7-69 OS Methanofollis liminatans DSM 4140 #=GS J0SAV3/7-69 DE DNA repair and recombination protein RadA #=GS J0SAV3/7-69 DR GENE3D; 9fdebdcf6db6d3b33b5fb6733b234e7c/7-69; #=GS J0SAV3/7-69 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanofollis; Methanofollis liminatans; #=GS A0A117KTQ7/1-71 AC A0A117KTQ7 #=GS A0A117KTQ7/1-71 OS Archaeoglobus fulgidus #=GS A0A117KTQ7/1-71 DE DNA repair and recombination protein RadA #=GS A0A117KTQ7/1-71 DR GENE3D; bb0068bececf2fecf2285c266fbc190d/1-71; #=GS A0A117KTQ7/1-71 DR ORG; Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus; Archaeoglobus fulgidus; #=GS A0A075WBS0/1-71 AC A0A075WBS0 #=GS A0A075WBS0/1-71 OS Archaeoglobus fulgidus DSM 8774 #=GS A0A075WBS0/1-71 DE DNA repair and recombination protein RadA #=GS A0A075WBS0/1-71 DR GENE3D; bb0068bececf2fecf2285c266fbc190d/1-71; #=GS A0A075WBS0/1-71 DR ORG; Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus; Archaeoglobus fulgidus; #=GS B5IAB8/4-73 AC B5IAB8 #=GS B5IAB8/4-73 OS Aciduliprofundum boonei T469 #=GS B5IAB8/4-73 DE DNA repair and recombination protein RadA #=GS B5IAB8/4-73 DR GENE3D; cba32df49962085856086d5747a94643/4-73; #=GS B5IAB8/4-73 DR ORG; Archaea; Euryarchaeota; Aciduliprofundum; Aciduliprofundum boonei; #=GS I3RC67/39-102 AC I3RC67 #=GS I3RC67/39-102 OS Pyrococcus sp. ST04 #=GS I3RC67/39-102 DE DNA repair and recombination protein RadA #=GS I3RC67/39-102 DR GENE3D; e21d0a8185909c8affaf6ee19260a22d/39-102; #=GS I3RC67/39-102 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus; Pyrococcus sp. ST04; #=GS C6A058/44-107 AC C6A058 #=GS C6A058/44-107 OS Thermococcus sibiricus MM 739 #=GS C6A058/44-107 DE DNA repair and recombination protein RadA #=GS C6A058/44-107 DR GENE3D; eb947fed5928e7870b26f4b07fde2bd1/44-107; #=GS C6A058/44-107 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus sibiricus; #=GS A7IA52/7-71 AC A7IA52 #=GS A7IA52/7-71 OS Methanoregula boonei 6A8 #=GS A7IA52/7-71 DE DNA repair and recombination protein RadA #=GS A7IA52/7-71 DR GENE3D; b823b50bd16a2dd8827b00f26a033482/7-71; #=GS A7IA52/7-71 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanoregula; Methanoregula boonei; #=GS A2SR54/5-72 AC A2SR54 #=GS A2SR54/5-72 OS Methanocorpusculum labreanum Z #=GS A2SR54/5-72 DE DNA repair and recombination protein RadA #=GS A2SR54/5-72 DR GENE3D; 42621aa224e14165ce037e63fec6db78/5-72; #=GS A2SR54/5-72 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanocorpusculaceae; Methanocorpusculum; Methanocorpusculum labreanum; #=GS A3CWU4/13-72 AC A3CWU4 #=GS A3CWU4/13-72 OS Methanoculleus marisnigri JR1 #=GS A3CWU4/13-72 DE DNA repair and recombination protein RadA #=GS A3CWU4/13-72 DR GENE3D; ec0def1f49b14d031aa45ce90f698b57/13-72; #=GS A3CWU4/13-72 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanomicrobiaceae; Methanoculleus; Methanoculleus marisnigri; #=GS T0YSS0/23-83 AC T0YSS0 #=GS T0YSS0/23-83 OS mine drainage metagenome #=GS T0YSS0/23-83 DE DNA repair and recombination protein RadA #=GS T0YSS0/23-83 DR GENE3D; 42b8ea253ab226893e2933bdd458eb75/23-83; #=GS T0YSS0/23-83 DR ORG; mine drainage metagenome; #=GF TC 96.9 4.9E-31 #=GF SQ 17 1pznA01/35-100 -----------RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFXRA---- O58001/43-106 -----------KSIEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEVAGISEGAALKIIQAARKAANLGTFM------ O29269/1-71 MSEESNEETKIIELEDIPGVGPETARKLREAGYSTIEAVAVASPSELANVGGITEGNAVKIIQAARKLANI---------- L0HAP6/7-69 ------------EIEDLPGVGPSTADKLREAGYLSVESIATASPAELSEVSEISESTAKKIIKAAREAADVGGFK------ F8AHL2/40-103 -----------RTIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGAALRIIQAARKAANIGTFM------ I7LIX1/5-67 ------------DLEDLPGVGPTTAEKLREAGYGTVESIATATTSDLAEAAEIGEGTAKKVILAARKMADIGGFK------ T0N1N3/1-71 MVESKKAETDKMSIEDIPGVGEATAEKLRDSGYDDVMAIAVAAPKDLSEITGIGEGAIIKIIAAARKLADV---------- J0SAV3/7-69 ------------DLEDLPGVGPTTAEKLREAGYATVESIATASPADLAEAAEIGESSAKKIIKAAREIADIGGFK------ A0A117KTQ7/1-71 MSEESNEETKIIELEDIPGVGPETARKLREAGYSTIEAVAVASPSELANVGGITEGNAVKIIQAARKLANI---------- A0A075WBS0/1-71 MSEESNEETKIIELEDIPGVGPETARKLREAGYSTIEAVAVASPSELANVGGITEGNAVKIIQAARKLANI---------- B5IAB8/4-73 -LAKKKEEKEEYTLEDLPGVGPTTAEKLREAGYTDLIELAVASPKDLADTVGIGEGVAQKIILAARKYANV---------- I3RC67/39-102 -----------RTIEDLPGVGPATAEKLREAGFDTLEAIAVASPIELKEIAGISEGAAIKIIQAARKAANLGTFM------ C6A058/44-107 -----------KSIEDLPGVGPATAEKLREAGYDSLEAIAVASPLELKELAGVSEGAALKIIQAAREAANIGTFM------ A7IA52/7-71 ------------EIEDLPGVGPSTADKLREAGYLSVESIATASPAELSEITEISESTAKKIIKAARESADIGSFRTG---- A2SR54/5-72 ------------DIEEIPGVGPATADRLRDAGYITVESIATATPVDLAEAAELGESTTKKIIKAAREMADIGGFKTGTDI- A3CWU4/13-72 --------------------GATTAEKLREAGYGTVESVATATTSDLAEAAEIGEATAKKVILAARKMADIGGFKTGRDI- T0YSS0/23-83 --------------------GEATAEKLRENGYDDILSLAVASPKDLSELAGIGEGAAIKIIAAARKLADVGNFESGEEIM #=GC scorecons 000000000001346646669649968998798355556969673794645685964738894999649663231000000 #=GC scorecons_70 ______________*__*****_**_*******_____**_***_**_*__**_**_*_***_****_***__________ #=GC scorecons_80 ____________________*__**_*******______*_*_*__*_____*_*__*_***_***__*____________ #=GC scorecons_90 ____________________*__**_****_**______*_*____*_______*____***_***__*____________ //