# STOCKHOLM 1.0
#=GF ID 1.10.150.20/FF/16488
#=GF DE DNA-directed RNA polymerase subunit alpha
#=GF AC 1.10.150.20/FF/16488
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 14.789
#=GS Q9RSJ6/278-341      AC Q9RSJ6
#=GS Q9RSJ6/278-341      OS Deinococcus radiodurans R1
#=GS Q9RSJ6/278-341      DE DNA-directed RNA polymerase subunit alpha
#=GS Q9RSJ6/278-341      DR GENE3D; 2f9aae14d210be16863e3b05d4b1d2ab/278-341; 
#=GS Q9RSJ6/278-341      DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus radiodurans; 
#=GS Q9RSJ6/278-341      DR EC; 2.7.7.6; 
#=GS E8UBV3/258-321      AC E8UBV3
#=GS E8UBV3/258-321      OS Deinococcus maricopensis DSM 21211
#=GS E8UBV3/258-321      DE DNA-directed RNA polymerase subunit alpha
#=GS E8UBV3/258-321      DR GENE3D; 1a50256977b462bb5128cad909e507cc/258-321; 
#=GS E8UBV3/258-321      DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus maricopensis; 
#=GS E8UBV3/258-321      DR EC; 2.7.7.6; 
#=GS L0A3N7/261-323      AC L0A3N7
#=GS L0A3N7/261-323      OS Deinococcus peraridilitoris DSM 19664
#=GS L0A3N7/261-323      DE DNA-directed RNA polymerase subunit alpha
#=GS L0A3N7/261-323      DR GENE3D; 253e46c8de28263e7faccc2249b8c1b8/261-323; 
#=GS L0A3N7/261-323      DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus peraridilitoris; 
#=GS L0A3N7/261-323      DR EC; 2.7.7.6; 
#=GS A0A0Q0WEU1/271-333  AC A0A0Q0WEU1
#=GS A0A0Q0WEU1/271-333  OS Deinococcus sp. UR1
#=GS A0A0Q0WEU1/271-333  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A0Q0WEU1/271-333  DR GENE3D; 36aaf034079a01911232d2b7d76a37e1/271-333; 
#=GS A0A0Q0WEU1/271-333  DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus sp. UR1; 
#=GS A0A0Q0WEU1/271-333  DR EC; 2.7.7.6; 
#=GS C1CXD4/271-333      AC C1CXD4
#=GS C1CXD4/271-333      OS Deinococcus deserti VCD115
#=GS C1CXD4/271-333      DE DNA-directed RNA polymerase subunit alpha
#=GS C1CXD4/271-333      DR GENE3D; 373ca74020e587b119776bc73edb14f8/271-333; 
#=GS C1CXD4/271-333      DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus deserti; 
#=GS C1CXD4/271-333      DR EC; 2.7.7.6; 
#=GS A0A072NDP8/267-329  AC A0A072NDP8
#=GS A0A072NDP8/267-329  OS Deinococcus sp. RL
#=GS A0A072NDP8/267-329  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A072NDP8/267-329  DR GENE3D; 52067c0aa1a3254bd423879f4c563077/267-329; 
#=GS A0A072NDP8/267-329  DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus sp. RL; 
#=GS A0A072NDP8/267-329  DR EC; 2.7.7.6; 
#=GS A0A0A7KEW6/275-337  AC A0A0A7KEW6
#=GS A0A0A7KEW6/275-337  OS Deinococcus swuensis
#=GS A0A0A7KEW6/275-337  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A0A7KEW6/275-337  DR GENE3D; 66acf3484cbe8f39dc4d89b9f76c7450/275-337; 
#=GS A0A0A7KEW6/275-337  DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus swuensis; 
#=GS A0A0A7KEW6/275-337  DR EC; 2.7.7.6; 
#=GS H8GT38/277-339      AC H8GT38
#=GS H8GT38/277-339      OS Deinococcus gobiensis I-0
#=GS H8GT38/277-339      DE DNA-directed RNA polymerase subunit alpha
#=GS H8GT38/277-339      DR GENE3D; 84fe0bec5f724513daca2aadee5a9e1d/277-339; 
#=GS H8GT38/277-339      DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus gobiensis; 
#=GS H8GT38/277-339      DR EC; 2.7.7.6; 
#=GS A0A0U3SU10/271-333  AC A0A0U3SU10
#=GS A0A0U3SU10/271-333  OS Deinococcus actinosclerus
#=GS A0A0U3SU10/271-333  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A0U3SU10/271-333  DR GENE3D; ab80de7bd6b514e02f50a4ba60cb6a1b/271-333; 
#=GS A0A0U3SU10/271-333  DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus actinosclerus; 
#=GS A0A0U3SU10/271-333  DR EC; 2.7.7.6; 
#=GS A0A172TB41/271-333  AC A0A172TB41
#=GS A0A172TB41/271-333  OS Deinococcus puniceus
#=GS A0A172TB41/271-333  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A172TB41/271-333  DR GENE3D; bb757bb1835a763868fde83d1f380290/271-333; 
#=GS A0A172TB41/271-333  DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus puniceus; 
#=GS A0A172TB41/271-333  DR EC; 2.7.7.6; 
#=GS A0A0F7JML3/271-333  AC A0A0F7JML3
#=GS A0A0F7JML3/271-333  OS Deinococcus soli Cha et al. 2016
#=GS A0A0F7JML3/271-333  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A0F7JML3/271-333  DR GENE3D; be45573d7d230125745b49e5b25cd35b/271-333; 
#=GS A0A0F7JML3/271-333  DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus soli Cha et al. 2016; 
#=GS A0A0F7JML3/271-333  DR EC; 2.7.7.6; 
#=GS A0A100HHC4/271-333  AC A0A100HHC4
#=GS A0A100HHC4/271-333  OS Deinococcus grandis
#=GS A0A100HHC4/271-333  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A100HHC4/271-333  DR GENE3D; be45573d7d230125745b49e5b25cd35b/271-333; 
#=GS A0A100HHC4/271-333  DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus grandis; 
#=GS A0A100HHC4/271-333  DR EC; 2.7.7.6; 
#=GS A0A0Q5L282/277-339  AC A0A0Q5L282
#=GS A0A0Q5L282/277-339  OS Deinococcus sp. Leaf326
#=GS A0A0Q5L282/277-339  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A0Q5L282/277-339  DR GENE3D; dcef0fa14ec63c51974561b8f17727a3/277-339; 
#=GS A0A0Q5L282/277-339  DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus sp. Leaf326; 
#=GS A0A0Q5L282/277-339  DR EC; 2.7.7.6; 
#=GS F0RJW6/265-328      AC F0RJW6
#=GS F0RJW6/265-328      OS Deinococcus proteolyticus MRP
#=GS F0RJW6/265-328      DE DNA-directed RNA polymerase subunit alpha
#=GS F0RJW6/265-328      DR GENE3D; df5ec1380bd29acacd4d4c62383267aa/265-328; 
#=GS F0RJW6/265-328      DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus proteolyticus; 
#=GS F0RJW6/265-328      DR EC; 2.7.7.6; 
#=GS A0A016QR46/270-332  AC A0A016QR46
#=GS A0A016QR46/270-332  OS Deinococcus phoenicis
#=GS A0A016QR46/270-332  DE DNA-directed RNA polymerase subunit alpha
#=GS A0A016QR46/270-332  DR GENE3D; e51c680cfdc37e7cc404b9190cf6b348/270-332; 
#=GS A0A016QR46/270-332  DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus phoenicis; 
#=GS A0A016QR46/270-332  DR EC; 2.7.7.6; 
#=GS Q1IX99/269-331      AC Q1IX99
#=GS Q1IX99/269-331      OS Deinococcus geothermalis DSM 11300
#=GS Q1IX99/269-331      DE DNA-directed RNA polymerase subunit alpha
#=GS Q1IX99/269-331      DR GENE3D; fb8bfb8a6d921c4d59390f5704d0915c/269-331; 
#=GS Q1IX99/269-331      DR ORG; Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus geothermalis; 
#=GS Q1IX99/269-331      DR EC; 2.7.7.6; 
#=GF TC 149.5 9.2E-48
#=GF SQ 16
Q9RSJ6/278-341              PRVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGIGERSLDEIKQQLAQFGLALRD
E8UBV3/258-321              PKVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGIGERSLDEIKAQLAQFGLSLKD
L0A3N7/261-323              -KVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGIGERSLDEIKAQLAQFGLALRD
A0A0Q0WEU1/271-333          -RVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGIGERSLDEIKQQLAQFGLALRD
C1CXD4/271-333              -RVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGIGERSLDEIKQQLAQFGLALRD
A0A072NDP8/267-329          -RVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGIGERSLDEIKQQLAQFGLALRD
A0A0A7KEW6/275-337          -RVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGIGERSLDEIKQQLAQFGLALRD
H8GT38/277-339              -RVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGIGERSLDEIKQQLAQFGLALRD
A0A0U3SU10/271-333          -RVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGIGERSLDEIKQQLAQFGLALRD
A0A172TB41/271-333          -RVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGIGERSLDEIKQQLAQFGLALRD
A0A0F7JML3/271-333          -RVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGIGERSLDEIKQQLAQFGLALRD
A0A100HHC4/271-333          -RVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGIGERSLDEIKQQLAQFGLALRD
A0A0Q5L282/277-339          -RVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGIGERSLDEIKQQLAQFGLALRD
F0RJW6/265-328              PSVSLEGLGLTTRVLHSLKEEGIDNVDALCALSDRDLKKVPGIGERSLDEIKQQLAQFGKALRD
A0A016QR46/270-332          -RVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGIGERSLDEIKQQLAQFGLALRD
Q1IX99/269-331              -RVTLEGLGLTTRVLHSLKEEGIDSVDALCALSDRDLKKVPGIGERSLDEIKQQLAQFGLALRD
#=GC scorecons              1596999999999999999999996999999999999999999999999999699999957979
#=GC scorecons_70           __**************************************************_******_****
#=GC scorecons_80           __*_********************_***************************_******__***
#=GC scorecons_90           __*_********************_***************************_******__*_*
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