# STOCKHOLM 1.0
#=GF ID 1.10.1200.30/FF/72
#=GF DE Truncated Pr160 gag-pol polyprotein
#=GF AC 1.10.1200.30/FF/72
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 38.971
#=GS 1d1dA02/173-262  AC O92954
#=GS 1d1dA02/173-262  OS Rous sarcoma virus - Schmidt-Ruppin B
#=GS 1d1dA02/173-262  DE Gag-Pro polyprotein
#=GS 1d1dA02/173-262  DR CATH; 1d1d; A:151-230; 
#=GS 1d1dA02/173-262  DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS Q04095/390-476   AC Q04095
#=GS Q04095/390-476   OS Rous sarcoma virus (strain Schmidt-Ruppin A)
#=GS Q04095/390-476   DE Gag-Pro-Pol polyprotein
#=GS Q04095/390-476   DR GENE3D; 08a95ff0af5ea705e30d3c3ea0f0b939/390-476; 
#=GS Q04095/390-476   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS Q04095/390-476   DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS 1eoqA00/1-77     AC P03322
#=GS 1eoqA00/1-77     OS Rous sarcoma virus - Prague C
#=GS 1eoqA00/1-77     DE Gag-Pro polyprotein
#=GS 1eoqA00/1-77     DR CATH; 1eoq; A:154-230; 
#=GS 1eoqA00/1-77     DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS 3g0vA00/1-77     AC P03322
#=GS 3g0vA00/1-77     OS Rous sarcoma virus - Prague C
#=GS 3g0vA00/1-77     DE Gag-Pro polyprotein
#=GS 3g0vA00/1-77     DR CATH; 3g0v; A:151-226; 
#=GS 3g0vA00/1-77     DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS 3g1gA00/1-87     AC P03322
#=GS 3g1gA00/1-87     OS Rous sarcoma virus - Prague C
#=GS 3g1gA00/1-87     DE Gag-Pro polyprotein
#=GS 3g1gA00/1-87     DR CATH; 3g1g; A:151-227; 
#=GS 3g1gA00/1-87     DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS 3g1iA00/1-77     AC P03322
#=GS 3g1iA00/1-77     OS Rous sarcoma virus - Prague C
#=GS 3g1iA00/1-77     DE Gag-Pro polyprotein
#=GS 3g1iA00/1-77     DR CATH; 3g1i; A:151-226; 
#=GS 3g1iA00/1-77     DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS 3g26A00/1-77     AC P03322
#=GS 3g26A00/1-77     OS Rous sarcoma virus - Prague C
#=GS 3g26A00/1-77     DE Gag-Pro polyprotein
#=GS 3g26A00/1-77     DR CATH; 3g26; A:150-226; 
#=GS 3g26A00/1-77     DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS 3g28A00/1-77     AC P03322
#=GS 3g28A00/1-77     OS Rous sarcoma virus - Prague C
#=GS 3g28A00/1-77     DE Gag-Pro polyprotein
#=GS 3g28A00/1-77     DR CATH; 3g28; A:150-226; 
#=GS 3g28A00/1-77     DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS O92956/390-476   AC O92956
#=GS O92956/390-476   OS Rous sarcoma virus - Schmidt-Ruppin B
#=GS O92956/390-476   DE Gag-Pro-Pol polyprotein
#=GS O92956/390-476   DR GENE3D; 37e0dffd15fdd823a62a7ad9972c557f/390-476; 
#=GS O92956/390-476   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS O92956/390-476   DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS P03354/390-476   AC P03354
#=GS P03354/390-476   OS Rous sarcoma virus - Prague C
#=GS P03354/390-476   DE Gag-Pro-Pol polyprotein
#=GS P03354/390-476   DR GENE3D; f36623226a6306d750289dede37689a2/390-476; 
#=GS P03354/390-476   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS P03354/390-476   DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 
#=GS 3g1gB00/1-87     AC P03322
#=GS 3g1gB00/1-87     OS Rous sarcoma virus - Prague C
#=GS 3g1gB00/1-87     DE Gag-Pro polyprotein
#=GS 3g1gB00/1-87     DR CATH; 3g1g; B:151-225; 
#=GS 3g1gB00/1-87     DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS 3g1iB00/1-77     AC P03322
#=GS 3g1iB00/1-77     OS Rous sarcoma virus - Prague C
#=GS 3g1iB00/1-77     DE Gag-Pro polyprotein
#=GS 3g1iB00/1-77     DR CATH; 3g1i; B:152-226; 
#=GS 3g1iB00/1-77     DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS 3g21A00/1-77     AC P03322
#=GS 3g21A00/1-77     OS Rous sarcoma virus - Prague C
#=GS 3g21A00/1-77     DE Gag-Pro polyprotein
#=GS 3g21A00/1-77     DR CATH; 3g21; A:150-226; 
#=GS 3g21A00/1-77     DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS 3g29A00/1-77     AC P03322
#=GS 3g29A00/1-77     OS Rous sarcoma virus - Prague C
#=GS 3g29A00/1-77     DE Gag-Pro polyprotein
#=GS 3g29A00/1-77     DR CATH; 3g29; A:150-226; 
#=GS 3g29A00/1-77     DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS 3g29B00/1-77     AC P03322
#=GS 3g29B00/1-77     OS Rous sarcoma virus - Prague C
#=GS 3g29B00/1-77     DE Gag-Pro polyprotein
#=GS 3g29B00/1-77     DR CATH; 3g29; B:150-226; 
#=GS 3g29B00/1-77     DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS O92954/390-476   AC O92954
#=GS O92954/390-476   OS Rous sarcoma virus - Schmidt-Ruppin B
#=GS O92954/390-476   DE Gag-Pro polyprotein
#=GS O92954/390-476   DR GENE3D; 0416ab06713131e092cfc5d4fcc66176/390-476; 
#=GS O92954/390-476   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS Q98WV8/390-476   AC Q98WV8
#=GS Q98WV8/390-476   OS Avian leukosis virus
#=GS Q98WV8/390-476   DE Gag polyprotein
#=GS Q98WV8/390-476   DR GENE3D; 05e88d866f348cc96f032545a56c456d/390-476; 
#=GS Q98WV8/390-476   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; 
#=GS G4XVS6/106-178   AC G4XVS6
#=GS G4XVS6/106-178   OS Avian leukosis virus
#=GS G4XVS6/106-178   DE Core nucleocapsid protein p27
#=GS G4XVS6/106-178   DR GENE3D; 089d307f3bd09a43dffc8df482bef149/106-178; 
#=GS G4XVS6/106-178   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; 
#=GS B5LYL9/152-238   AC B5LYL9
#=GS B5LYL9/152-238   OS Avian leukosis virus
#=GS B5LYL9/152-238   DE Gag protein
#=GS B5LYL9/152-238   DR GENE3D; 1326c3e5bd67acf0cc2f940a9df4d868/152-238; 
#=GS B5LYL9/152-238   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian leukosis virus; 
#=GS P06444/390-452   AC P06444
#=GS P06444/390-452   OS Avian myelocytomatosis virus hbi
#=GS P06444/390-452   DE Gag polyprotein
#=GS P06444/390-452   DR GENE3D; 7192af57bf4c5ddcc56b9eaaf809085b/390-452; 
#=GS P06444/390-452   DR ORG; Viruses; Retroviridae; Avian myelocytomatosis virus hbi; 
#=GS P0C776/390-476   AC P0C776
#=GS P0C776/390-476   OS Rous sarcoma virus (strain Schmidt-Ruppin A)
#=GS P0C776/390-476   DE Gag-Pro polyprotein
#=GS P0C776/390-476   DR GENE3D; 9719e02fd3089ce67222c68cdb54f2f9/390-476; 
#=GS P0C776/390-476   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS Q77YH0/390-476   AC Q77YH0
#=GS Q77YH0/390-476   OS Rous sarcoma virus
#=GS Q77YH0/390-476   DE Pr76 polyprotein
#=GS Q77YH0/390-476   DR GENE3D; ae9f9cf936000431a83f5b02581a633d/390-476; 
#=GS Q77YH0/390-476   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS P03322/390-476   AC P03322
#=GS P03322/390-476   OS Rous sarcoma virus - Prague C
#=GS P03322/390-476   DE Gag-Pro polyprotein
#=GS P03322/390-476   DR GENE3D; ae9f9cf936000431a83f5b02581a633d/390-476; 
#=GS P03322/390-476   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Rous sarcoma virus; 
#=GS P03323/390-452   AC P03323
#=GS P03323/390-452   OS Avian myelocytomatosis virus 29
#=GS P03323/390-452   DE Gag polyprotein
#=GS P03323/390-452   DR GENE3D; ed22e07bd9c0e6b8e915e9248e4ded10/390-452; 
#=GS P03323/390-452   DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Alpharetrovirus; Avian myelocytomatosis virus 29; 
#=GF TC 146.1 1.5E-46
#=GF SQ 24
1d1dA02/173-262          -GPWADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTLTTPGEIIKYVLDRQKIAPLTDQGIAAAM
Q04095/390-476           -GPWADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTLTTPGEIIKYVLDRQKIAPLTDQGIA---
1eoqA00/1-77             ----MDIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTAP----------
3g0vA00/1-77             AGPWADIMQGPSESFVDFANRLIKAVEGSALPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ--------------
3g1gA00/1-87             -GPWADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTAPLTDQGIA---
3g1iA00/1-77             AGPWADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ--------------
3g26A00/1-77             AGPWADIMQGPSESFVDFANRLIKAVEGSDLPPSCRAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ--------------
3g28A00/1-77             AGPWADIMQGPSESFVDFANRLIKAVEGSNLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ--------------
O92956/390-476           -GPWADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTLTTPGEIIKYVLDRQKIAPLTDQGIA---
P03354/390-476           -GPWADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTAPLTDQGIA---
3g1gB00/1-87             -GPWADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTAPLTDQGIA---
3g1iB00/1-77             AGPWADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ--------------
3g21A00/1-77             AGPWADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ--------------
3g29A00/1-77             AGPWADIMQGPSESFVDFANRLIKAVEGSNLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ--------------
3g29B00/1-77             AGPWADIMQGPSESFVDFANRLIKAVEGSNLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQ--------------
O92954/390-476           -GPWADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTLTTPGEIIKYVLDRQKIAPLTDQGIA---
Q98WV8/390-476           -DPWAEITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTLTTPGEIIKYVLDRQKTAPLTDQGIA---
G4XVS6/106-178           -DPWAEITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTLTTPGEIIKYVL-----------------
B5LYL9/152-238           -DPWAEITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTLTTPGEIIKYVLDRQKTAPLTDRGIA---
P06444/390-452           -GPWADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTVH---------------------------
P0C776/390-476           -GPWADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTLTTPGEIIKYVLDRQKIAPLTDQGIA---
Q77YH0/390-476           -GPWADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTAPLTDQGIA---
P03322/390-476           -GPWADIMQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTAPLTDQGIA---
P03323/390-452           -GPWADITQGPSESFVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRAAPSTVH---------------------------
#=GC scorecons           0688889599999999999999999999979999899999999999999999999996999977666666666655511111111111000
#=GC scorecons_70        _******_********************************************************___________________________
#=GC scorecons_80        __*****_*************************************************_*****____________________________
#=GC scorecons_90        __*****_*********************_***************************_****_____________________________
//