# STOCKHOLM 1.0 #=GF ID 1.10.1200.30/FF/383 #=GF DE Gag polyprotein #=GF AC 1.10.1200.30/FF/383 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 90.802 #=GS M3X5Z2/77-175 AC M3X5Z2 #=GS M3X5Z2/77-175 OS Felis catus #=GS M3X5Z2/77-175 DE Uncharacterized protein #=GS M3X5Z2/77-175 DR GENE3D; 20b07baf3dce84a7531e4945a358a989/77-175; #=GS M3X5Z2/77-175 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis; Felis catus; #=GS W5PXQ0/392-492 AC W5PXQ0 #=GS W5PXQ0/392-492 OS Ovis aries #=GS W5PXQ0/392-492 DE Uncharacterized protein #=GS W5PXQ0/392-492 DR GENE3D; 5a55468edde8ab7d60e7c4ca73562ff7/392-492; #=GS W5PXQ0/392-492 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries; #=GS M3Z829/386-483 AC M3Z829 #=GS M3Z829/386-483 OS Mustela putorius furo #=GS M3Z829/386-483 DE Uncharacterized protein #=GS M3Z829/386-483 DR GENE3D; 631699bfaa9c4f13bf57a6726ea02d79/386-483; #=GS M3Z829/386-483 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Caniformia; Mustelidae; Mustelinae; Mustela; Mustela putorius; Mustela putorius furo; #=GS M3WTA7/1-78 AC M3WTA7 #=GS M3WTA7/1-78 OS Felis catus #=GS M3WTA7/1-78 DE Uncharacterized protein #=GS M3WTA7/1-78 DR GENE3D; 8b8de724df739876bb27fed44fc7be2f/1-78; #=GS M3WTA7/1-78 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis; Felis catus; #=GS U3KLZ9/267-362 AC U3KLZ9 #=GS U3KLZ9/267-362 OS Oryctolagus cuniculus #=GS U3KLZ9/267-362 DE Uncharacterized protein #=GS U3KLZ9/267-362 DR GENE3D; b7f060b2c7833747c760fb9d32a39f9a/267-362; #=GS U3KLZ9/267-362 DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Lagomorpha; Leporidae; Oryctolagus; Oryctolagus cuniculus; #=GS P07567/436-533 AC P07567 #=GS P07567/436-533 OS Mason-Pfizer monkey virus #=GS P07567/436-533 DE Gag polyprotein #=GS P07567/436-533 DR GENE3D; fbb8c2f9200554f4dfed0d9b52512465/436-533; #=GS P07567/436-533 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; #=GS P07567/436-533 DR GO; GO:0005515; GO:0030430; #=GS P21411/498-592 AC P21411 #=GS P21411/498-592 OS Squirrel monkey retrovirus #=GS P21411/498-592 DE Gag polyprotein #=GS P21411/498-592 DR GENE3D; 142e647e452765eda2131551547e955b/498-592; #=GS P21411/498-592 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Squirrel monkey retrovirus; #=GS E0WCK6/439-536 AC E0WCK6 #=GS E0WCK6/439-536 OS Simian retrovirus 4 #=GS E0WCK6/439-536 DE Gag polyprotein #=GS E0WCK6/439-536 DR GENE3D; 14ca899f2bf7b6b0f10547bd7786d96c/439-536; #=GS E0WCK6/439-536 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Simian retrovirus 4; #=GS Q9IWX3/22-119 AC Q9IWX3 #=GS Q9IWX3/22-119 OS Simian retrovirus 5 #=GS Q9IWX3/22-119 DE Gag protein #=GS Q9IWX3/22-119 DR GENE3D; 1f39acc3712ea7b14a6bd765ce52166c/22-119; #=GS Q9IWX3/22-119 DR ORG; Viruses; Retroviridae; Simian retrovirus 5; #=GS P04022/437-534 AC P04022 #=GS P04022/437-534 OS Simian retrovirus 1 #=GS P04022/437-534 DE Gag polyprotein #=GS P04022/437-534 DR GENE3D; 2916797b63e4b0b296d23ad14dff1c05/437-534; #=GS P04022/437-534 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; #=GS Q83955/77-178 AC Q83955 #=GS Q83955/77-178 OS Jaagsiekte sheep retrovirus #=GS Q83955/77-178 DE Capsid protein #=GS Q83955/77-178 DR GENE3D; 4dd7c3c4aa8e76e07ca06ed59432118d/77-178; #=GS Q83955/77-178 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Jaagsiekte sheep retrovirus; #=GS O92810/436-533 AC O92810 #=GS O92810/436-533 OS Mason-Pfizer monkey virus #=GS O92810/436-533 DE Pr95 #=GS O92810/436-533 DR GENE3D; 73cdf625fce2f34a526e8560f250cdff/436-533; #=GS O92810/436-533 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; #=GS O41288/438-537 AC O41288 #=GS O41288/438-537 OS Simian endogenous retrovirus #=GS O41288/438-537 DE Gag polyprotein #=GS O41288/438-537 DR GENE3D; 83dbf48de83d83c636373ee722fc811b/438-537; #=GS O41288/438-537 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; #=GS P51516/434-531 AC P51516 #=GS P51516/434-531 OS Simian retrovirus 2 #=GS P51516/434-531 DE Gag polyprotein #=GS P51516/434-531 DR GENE3D; 9737ff603b48a6cb8c9b870ac7c980ab/434-531; #=GS P51516/434-531 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; #=GS A0A168P5G1/388-488 AC A0A168P5G1 #=GS A0A168P5G1/388-488 OS Enzootic nasal tumour virus of goats #=GS A0A168P5G1/388-488 DE Gag polyprotein #=GS A0A168P5G1/388-488 DR GENE3D; 9a108ffc85a559da584d22d70e9d4ac8/388-488; #=GS A0A168P5G1/388-488 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Enzootic nasal tumour virus of goats; #=GS A0A1C9V0N3/439-536 AC A0A1C9V0N3 #=GS A0A1C9V0N3/439-536 OS Simian retrovirus 8 #=GS A0A1C9V0N3/439-536 DE Gag polyprotein #=GS A0A1C9V0N3/439-536 DR GENE3D; a1fa1ad385c193da24693407a555ddeb/439-536; #=GS A0A1C9V0N3/439-536 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Simian retrovirus 8; #=GS O56224/436-533 AC O56224 #=GS O56224/436-533 OS Mason-Pfizer monkey virus #=GS O56224/436-533 DE RT-IN #=GS O56224/436-533 DR GENE3D; aa4cbdb76b87146c9ea418c97bc6f821/436-533; #=GS O56224/436-533 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; #=GS Q9WJ20/389-489 AC Q9WJ20 #=GS Q9WJ20/389-489 OS Ovine enzootic nasal tumor virus #=GS Q9WJ20/389-489 DE Gag polyprotein #=GS Q9WJ20/389-489 DR GENE3D; b19d0e376d6f1255b612f42c0833cfbf/389-489; #=GS Q9WJ20/389-489 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Ovine enzootic nasal tumor virus; #=GS Q88189/155-250 AC Q88189 #=GS Q88189/155-250 OS Squirrel monkey retrovirus #=GS Q88189/155-250 DE Gag protein #=GS Q88189/155-250 DR GENE3D; b26cc68961a0c2567442a7af9b89a73e/155-250; #=GS Q88189/155-250 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Squirrel monkey retrovirus; #=GS P31622/388-488 AC P31622 #=GS P31622/388-488 OS Jaagsiekte sheep retrovirus #=GS P31622/388-488 DE Gag polyprotein #=GS P31622/388-488 DR GENE3D; c259d17a77b6053959db49ba67945c77/388-488; #=GS P31622/388-488 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Jaagsiekte sheep retrovirus; #=GS L0MXX7/441-538 AC L0MXX7 #=GS L0MXX7/441-538 OS Simian retrovirus Y #=GS L0MXX7/441-538 DE Gag protein #=GS L0MXX7/441-538 DR GENE3D; dd9ce3f39f74f340ef788bd7a7cb1f81/441-538; #=GS L0MXX7/441-538 DR ORG; Viruses; Retroviridae; Simian retrovirus Y; #=GS A0A0D3R1B4/484-578 AC A0A0D3R1B4 #=GS A0A0D3R1B4/484-578 OS Desmodus rotundus endogenous retrovirus #=GS A0A0D3R1B4/484-578 DE Gag polyprotein #=GS A0A0D3R1B4/484-578 DR GENE3D; edab5a33c80ac1971aeffcaa34abe36c/484-578; #=GS A0A0D3R1B4/484-578 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Desmodus rotundus endogenous retrovirus; #=GS O56225/436-533 AC O56225 #=GS O56225/436-533 OS Mason-Pfizer monkey virus #=GS O56225/436-533 DE Gag polyprotein #=GS O56225/436-533 DR GENE3D; fbb8c2f9200554f4dfed0d9b52512465/436-533; #=GS O56225/436-533 DR ORG; Viruses; Retroviridae; Orthoretrovirinae; Betaretrovirus; Mason-Pfizer monkey virus; #=GF TC 130.1 3.4E-41 #=GF SQ 23 M3X5Z2/77-175 STRGRTEKLSKIRQGPDKKYQDFVGRLLTAVSRIITDGEAGTIIVKQLAYKNANSTCQAAIRPWKNQGTLEDYVRLCAEIGPSYIQGITLADALKGIDP--- W5PXQ0/392-492 SSSTKTEDLSKVRQGPDEPYQDFVARLLDTIGKIMSDEKAGMVLAKQLAFENANAACQAALRPYRKKGDLSDFIRICADIGPSYMQGIAMAAALQGKSIKE- M3Z829/386-483 SSGTRTVELSKIRQGPDEHYQDFVARLLKEVGRIVDDGEARTIIVKHLAFENANSFCQVAIRPRKNKGTLEDYIRLCAEIGSSYIQGITLAAALRGIS---- M3WTA7/1-78 ---------SKIRQGPDEKYQDFVGRLLTAVSRIITDGEAGTIIVKQLAYENANSACQAAIRPWKNQGTLEDYIRLCAEVH----------AQLQGK----- U3KLZ9/267-362 QRGAVTTSLAKIQQGPDEPYSDFVSRLNVAAERLVGPGENGSAFVTHLAFENANPACKDILRPHKHKGDLSDYVRLCAGVGSAHAMGLAIGAALKL------ P07567/436-533 VKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGSAEAGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDIGPSYQQGLAMAAAFSGQT---- P21411/498-592 QKGAATTSLAKIRQGPDESYSDFVSRLQETADRLFGSGESESSFVKHLAYENANPACQSAIRPFRQK-ELSTMSPLL-WYCSAHAVGLAIGAALQNL----- E0WCK6/439-536 VKGDPGASLTGVKQGPDEPFSEFVHRLMTTAGRIFGNAEAGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDIGPSYQQGLAMAAAFSGQT---- Q9IWX3/22-119 VKGDPGASLTGVKQGPDEPFSEFVHRLITTAGRIFGNAEAGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDIGPSYQQGLAMAAAFSGQT---- P04022/437-534 VKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGSAEAGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDIGPSYQQGLAMAAAFSGQT---- Q83955/77-178 SSSTKTEDLSKVRQGPDEPYQDFVARLLDTIGKIMSDEKAGMVLAKQLAFENANSACQAALRPYRKKGDLSDFIRICADIGPSYMQGIAMAAALQGKRIKEV O92810/436-533 VKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGSAEAGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDIGPSYQQGLAMAAAFSGQT---- O41288/438-537 VKGDPGASLTAVKQGPNEPFSDFVHRLMTTAGRIFGNAETGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDIGPSYQQGLAMTAAFSGQTVR-- P51516/434-531 VKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGNAEAGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDIGPSYQQGLAMAAAFSGQT---- A0A168P5G1/388-488 SSSTKTEDLSKIRQGPDEPYQDFVARLLDAIGKIMSDEQAGMLLAKQLAFENANSACQAALRPYRKKGDLSDFIRICADIGPSYMQGIAMAAALQGKSIKE- A0A1C9V0N3/439-536 VKGDPGASLTGVKQGPDEPFSEFVHRLMTTAGRIFGNAEAGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDIGPSYQQGLAMAAAFSGQT---- O56224/436-533 VKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGSAEAGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDIGPSYQQGLAMAAAFSGQT---- Q9WJ20/389-489 SSSTKTEDLSKVRQGPDEPYQDFVARLLDTIGKIMSDEKAGMVLAKQLAFENANSACQAALRPYRKKGDLSDFIRICADIGPSYMQGIAMAAALQGKSIKE- Q88189/155-250 QKGAATTSLAKIRQGPDESYSDFVSRLQETADRLFGSGESESSFVKHLAYENANPACQSAIRPFRQK-ELCDYVRLCSGIGSAHAVGLAIGAALQNL----- P31622/388-488 SSSTKTEDLSKVRQGPDEPYQDFVARLLDTIGKIMSDEKAGMVLAKQLAFENANSACQAALRPYRKKGDLSDFIRICADIGPSYMQGIAMAAALQGKSIKE- L0MXX7/441-538 VKGDPGASLTGVKQGPDEPFSEFVHRLITTAGRIFGNAEAGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDIGPSYQQGLAMAAAFSGQT---- A0A0D3R1B4/484-578 QKGTATTSLAKIRQGPDEPYSDFISRLQELAERLFGAGESENAFVKHLAYENANPACQNAIRPYRQG-ELCDYVRLCSGIGSAHAFGLAIGAALQN------ O56225/436-533 VKGDPGASLTGVKQGPDEPFADFVHRLITTAGRIFGSAEAGVDYVKQLAYENANPACQAAIRPYRKKTDLTGYIRLCSDIGPSYQQGLAMAAAFSGQT---- #=GC scorecons 345335347557699988574898499446557755456664346879978999679868699675746945768785577556347565588646320000 #=GC scorecons_70 ________*__*******_*_***_**_____**____***___**********_***_****_*_*__*__*****__**__*__*_*__***_*______ #=GC scorecons_80 ________*____*****_*_***_**_____**___________*********_***_*_**_*_*__*____***__**_____*____**_________ #=GC scorecons_90 _____________*****___***_**__________________*_**_****__**_*_**______*____*________________*__________ //