# STOCKHOLM 1.0
#=GF ID 1.10.1200.30/FF/373
#=GF DE Retrovirus-related Gag polyprotein
#=GF AC 1.10.1200.30/FF/373
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 38.093
#=GS Q7TQ39/372-468     AC Q7TQ39
#=GS Q7TQ39/372-468     OS Mus musculus
#=GS Q7TQ39/372-468     DE Gag protein
#=GS Q7TQ39/372-468     DR GENE3D; 2d5f548c4f1ba8db8b9cbc105ee0e365/372-468; 
#=GS Q7TQ39/372-468     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q64033/385-482     AC Q64033
#=GS Q64033/385-482     OS Mus sp.
#=GS Q64033/385-482     DE Antigen LEC-A
#=GS Q64033/385-482     DR GENE3D; a5a04f372f86d7a1c2aa650ab5d2b642/385-482; 
#=GS Q64033/385-482     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus sp.; 
#=GS A0A0P6CDF7/5-105   AC A0A0P6CDF7
#=GS A0A0P6CDF7/5-105   OS Daphnia magna
#=GS A0A0P6CDF7/5-105   DE HERV-K 6q14.1 provirus ancestral Gag-Pol polyprotein
#=GS A0A0P6CDF7/5-105   DR GENE3D; a7b7200d92b034be8c268890be6f2393/5-105; 
#=GS A0A0P6CDF7/5-105   DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; 
#=GS Q60505/359-455     AC Q60505
#=GS Q60505/359-455     OS Cricetulus sp.
#=GS Q60505/359-455     DE Chinese hamster provirus
#=GS Q60505/359-455     DR GENE3D; ce657f9d33545c43e8f93ded64d50007/359-455; 
#=GS Q60505/359-455     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Cricetidae; Cricetinae; Cricetulus; Cricetulus sp.; 
#=GS A0A0E9DC36/72-169  AC A0A0E9DC36
#=GS A0A0E9DC36/72-169  OS Chlamydia trachomatis
#=GS A0A0E9DC36/72-169  DE Gag gene protein p24 (Core nucleocapsid protein)
#=GS A0A0E9DC36/72-169  DR GENE3D; d676330ee71378f53ecdbff64ba81fc5/72-169; 
#=GS A0A0E9DC36/72-169  DR ORG; Bacteria; Chlamydiae; Chlamydiia; Chlamydiales; Chlamydiaceae; Chlamydia; Chlamydia trachomatis; 
#=GS P11365/353-450     AC P11365
#=GS P11365/353-450     OS Mouse intracisternal A-particle MIA14
#=GS P11365/353-450     DE Retrovirus-related Gag polyprotein
#=GS P11365/353-450     DR GENE3D; fa0fd9cff711695a04a62be6ba9987e5/353-450; 
#=GS P11365/353-450     DR ORG; Viruses; Retroviridae; Intracisternal A-particles; Mouse Intracisternal A-particle; 
#=GS P04023/363-421     AC P04023
#=GS P04023/363-421     OS Golden hamster intracisternal A-particle H18
#=GS P04023/363-421     DE Retrovirus-related Gag polyprotein
#=GS P04023/363-421     DR GENE3D; c5f403733946d95a02551ab424d8331b/363-421; 
#=GS P04023/363-421     DR ORG; Viruses; Retroviridae; Intracisternal A-particles; Golden hamster intracisternal A-particle H18; 
#=GF TC 131.6 2.3E-42
#=GF SQ 7
Q7TQ39/372-468             ----RAGETTGQLTKIIQGPQESFSDFVARMTEAAERIFGESEQAAPLIEQLIYEQATKECRAAIAPRKNKGLQDWLRVCRELGGPLSNAGLAAAILQSQN-
Q64033/385-482             ----RAGETTGQLTKIIQGPQESFSDFVARMTEAAERIFGESEQAAPLIEQLIYEQATKECRAAIAPRKNKGLQDWLRVCRELGGPLTNAGLAAAILQSQNR
A0A0P6CDF7/5-105           KALSRAGETTGQLTKIIQGPQESFSDFVARMTEAAERIFGESEQAAPLIEQLIYEQATKECRAAIAPRKNKGLQDWLRVCRELGGPLSNAGLAAAILQSQN-
Q60505/359-455             ----KRDESGGHLTKIVQGPQEPFSDFVARMTEAASRIFGDAEQAMPLIEQLVFEQATQECRAAIAPRKSKGLQDWLKICRELGGPLTNAGLAAAILQTQR-
A0A0E9DC36/72-169          ----RAGETTGQLTKIIQGPQESFSDFVARMTEAAERIFGESEQAAPLIEQLIYEQATKECRAAIAPRKNKGLQDWLRVCRELGGPLTNAGLAAAILQSQNR
P11365/353-450             ----RAGETTGQLTKVVQGPQESFSDFVARMTEAAERIFGESEQAAPLIEQLIYEQATKECRAAIAPRKNKGLQDWLRVCRELGGPLTNAGLAAAILQSQNR
P04023/363-421             ------------------------SDFVARMTEAASRIFGDSEQAMPLIEQLVYEQATQECRAAIAPRKSKGLQDWLRVCREL-------------------
#=GC scorecons             000032232232333323333323999999999994999967999499999968999959999999999599999997799993333233333333332320
#=GC scorecons_70          ________________________***********_*********_************_**********_*************___________________
#=GC scorecons_80          ________________________***********_****_****_******_*****_**********_*************___________________
#=GC scorecons_90          ________________________***********_****__***_******__****_**********_*******__****___________________
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