# STOCKHOLM 1.0
#=GF ID 1.10.1200.30/FF/1
#=GF DE Gag protein
#=GF AC 1.10.1200.30/FF/1
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 28.603
#=GS P63128/432-535  AC P63128
#=GS P63128/432-535  OS Homo sapiens
#=GS P63128/432-535  DE Endogenous retrovirus group K member 9 Pol protein
#=GS P63128/432-535  DR GENE3D; 281c98bd9f5d747481a07df412293d59/432-535; 
#=GS P63128/432-535  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P63128/432-535  DR EC; 2.7.7.49; 2.7.7.7; 3.1.26.4; 3.4.23.50; 
#=GS P62683/432-535  AC P62683
#=GS P62683/432-535  OS Homo sapiens
#=GS P62683/432-535  DE Endogenous retrovirus group K member 21 Gag polyprotein
#=GS P62683/432-535  DR GENE3D; 0b5eb0697b460a2920a3657a57eea827/432-535; 
#=GS P62683/432-535  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS Q7LDI9/432-535  AC Q7LDI9
#=GS Q7LDI9/432-535  OS Homo sapiens
#=GS Q7LDI9/432-535  DE Endogenous retrovirus group K member 6 Gag polyprotein
#=GS Q7LDI9/432-535  DR GENE3D; 156ee1d999b8b8e2ac91e8b05d2f8fc2/432-535; 
#=GS Q7LDI9/432-535  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P63126/432-535  AC P63126
#=GS P63126/432-535  OS Homo sapiens
#=GS P63126/432-535  DE Endogenous retrovirus group K member 9 Gag polyprotein
#=GS P63126/432-535  DR GENE3D; 1eb84e748a32aea9f178ba96ebd86b31/432-535; 
#=GS P63126/432-535  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P63145/432-535  AC P63145
#=GS P63145/432-535  OS Homo sapiens
#=GS P63145/432-535  DE Endogenous retrovirus group K member 24 Gag polyprotein
#=GS P63145/432-535  DR GENE3D; 3a80baceb12b2e5c39e6b09c75f699ee/432-535; 
#=GS P63145/432-535  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P62684/432-535  AC P62684
#=GS P62684/432-535  OS Homo sapiens
#=GS P62684/432-535  DE Endogenous retrovirus group K member 113 Gag polyprotein
#=GS P62684/432-535  DR GENE3D; 5d449408d83a0b3af257e2918882dee8/432-535; 
#=GS P62684/432-535  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS V9H0H3/432-535  AC V9H0H3
#=GS V9H0H3/432-535  OS Homo sapiens
#=GS V9H0H3/432-535  DE Gag-Pro-Pol-Env protein
#=GS V9H0H3/432-535  DR GENE3D; 5e538c6cd23d43c13444ef856a1ecded/432-535; 
#=GS V9H0H3/432-535  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P63130/432-535  AC P63130
#=GS P63130/432-535  OS Homo sapiens
#=GS P63130/432-535  DE Endogenous retrovirus group K member 7 Gag polyprotein
#=GS P63130/432-535  DR GENE3D; a154000d4da43d2c7ae48fcdc33d1168/432-535; 
#=GS P63130/432-535  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P62685/432-535  AC P62685
#=GS P62685/432-535  OS Homo sapiens
#=GS P62685/432-535  DE Endogenous retrovirus group K member 8 Gag polyprotein
#=GS P62685/432-535  DR GENE3D; d6053647d8504b1ce8a4addae4f0afb8/432-535; 
#=GS P62685/432-535  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS Q9YNA8/432-535  AC Q9YNA8
#=GS Q9YNA8/432-535  OS Homo sapiens
#=GS Q9YNA8/432-535  DE Endogenous retrovirus group K member 19 Gag polyprotein
#=GS Q9YNA8/432-535  DR GENE3D; e1db8935b1caba81882e8f77bffbe2e5/432-535; 
#=GS Q9YNA8/432-535  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P87889/432-535  AC P87889
#=GS P87889/432-535  OS Homo sapiens
#=GS P87889/432-535  DE Endogenous retrovirus group K member 10 Gag polyprotein
#=GS P87889/432-535  DR GENE3D; f27ac37ff658e6d17f785bbf18634ec3/432-535; 
#=GS P87889/432-535  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS Q9HDB9/439-509  AC Q9HDB9
#=GS Q9HDB9/439-509  OS Homo sapiens
#=GS Q9HDB9/439-509  DE Endogenous retrovirus group K member 5 Gag polyprotein
#=GS Q9HDB9/439-509  DR GENE3D; 39dd31a97cad6e07917fd647a69746bb/439-509; 
#=GS Q9HDB9/439-509  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P87891/191-295  AC P87891
#=GS P87891/191-295  OS Human endogenous retrovirus K
#=GS P87891/191-295  DE Gag protein
#=GS P87891/191-295  DR GENE3D; 6fe06c51c32474052c1c16b73feb1728/191-295; 
#=GS P87891/191-295  DR ORG; Viruses; Retroviridae; Human endogenous retrovirus K; 
#=GF TC 146.9 1.5E-46
#=GF SQ 13
P63128/432-535          -DPGSTCPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAMHKAMLMAQAITGVVL
P62683/432-535          -DPGSTCPSFNTVRQSSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAMHKAMLMAQAITGVVL
Q7LDI9/432-535          -DPGSTCPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAMHKAMLMAQAITGVVL
P63126/432-535          -DPGSTCPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAMHKAMLMAQAITGVVL
P63145/432-535          -DPGSACPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAMHKAMLMAQAITGVVL
P62684/432-535          -DPGSTCPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGMGGAMHKAMLMAQAITGVVL
V9H0H3/432-535          -DPGSTCPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKAHKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAMHKAMLMAQAITGVVL
P63130/432-535          -DPGSTCPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAMHKAMLMAQAITGVVL
P62685/432-535          -DPGSTCPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAMHKAMLMAQAITGVVL
Q9YNA8/432-535          -DPGSTCPSFNTVRQGSKEPYPDFVARLQDVAQKSIAIEKARKVIVELMAYENPNPECQSAIKPLKGKVPAGSDVISEYVKACDGMGGAMHKAMLMAQAITGVVL
P87889/432-535          -DPGSTCPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKAGKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAMHKAMLMAQAITGVVL
Q9HDB9/439-509          ---------INSIRQGSKEPYPDFVARLQDAAQKSITDDNARKVIVELMAYENANPECQSAIKPLKGKVPAGVDVITEYV-------------------------
P87891/191-295          QDPGSACPSFNTVRQGSKEPYPDFVARLQDVAQKSIADEKARKVIVELMAYENANPECQSAIKPLKGKVPAGSDVISEYVKACDGIGGAMHKAMLMAQAITGVVL
#=GC scorecons          033332333595699899999999999999599999576597999999999998999999999999999999499959993333323333333333333333333
#=GC scorecons_70       __________*_******************_*****_**_********************************_***_***_________________________
#=GC scorecons_80       __________*__*****************_*****_*__********************************_***_***_________________________
#=GC scorecons_90       __________*__*****************_*****____*_******************************_***_***_________________________
//