# STOCKHOLM 1.0
#=GF ID 1.10.10.60/FF/124588
#=GF DE Nif-specific regulatory protein
#=GF AC 1.10.10.60/FF/124588
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 71.394
#=GS P05407/528-582      AC P05407
#=GS P05407/528-582      OS Bradyrhizobium diazoefficiens USDA 110
#=GS P05407/528-582      DE Nif-specific regulatory protein
#=GS P05407/528-582      DR GENE3D; afe1686f10211a34134fb72127676880/528-582; 
#=GS P05407/528-582      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium diazoefficiens; 
#=GS P30667/573-625      AC P30667
#=GS P30667/573-625      OS Azospirillum brasilense
#=GS P30667/573-625      DE Nif-specific regulatory protein
#=GS P30667/573-625      DR GENE3D; 3a571ccdcff9b37c5d33e66a266ca5f9/573-625; 
#=GS P30667/573-625      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum; Azospirillum brasilense; 
#=GS P30667/573-625      DR GO; GO:2000144; 
#=GS A0A160JGH5/569-621  AC A0A160JGH5
#=GS A0A160JGH5/569-621  OS Azospirillum humicireducens
#=GS A0A160JGH5/569-621  DE Nif-specific transcriptional activator NifA
#=GS A0A160JGH5/569-621  DR GENE3D; 2efb7acdc48013637a8f76eee60d674d/569-621; 
#=GS A0A160JGH5/569-621  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum; Azospirillum humicireducens; 
#=GS P09133/568-615      AC P09133
#=GS P09133/568-615      OS Azorhizobium caulinodans ORS 571
#=GS P09133/568-615      DE Nif-specific regulatory protein
#=GS P09133/568-615      DR GENE3D; 36a714cc802aed4e11c33c900117ee3a/568-615; 
#=GS P09133/568-615      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium; Azorhizobium caulinodans; 
#=GS A0A1A5SXW6/551-607  AC A0A1A5SXW6
#=GS A0A1A5SXW6/551-607  OS Mesorhizobium sp. AA23
#=GS A0A1A5SXW6/551-607  DE Nif-specific transcriptional activator NifA
#=GS A0A1A5SXW6/551-607  DR GENE3D; 6c04a3c6b813751b503859045fa68321/551-607; 
#=GS A0A1A5SXW6/551-607  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium; Mesorhizobium sp. AA23; 
#=GS Q9EYV2/550-603      AC Q9EYV2
#=GS Q9EYV2/550-603      OS Mesorhizobium loti
#=GS Q9EYV2/550-603      DE NifA
#=GS Q9EYV2/550-603      DR GENE3D; 9f07fbf187a884ba5464b4d1475c8f5a/550-603; 
#=GS Q9EYV2/550-603      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium; Mesorhizobium loti; 
#=GS A0A0D2UUH0/581-626  AC A0A0D2UUH0
#=GS A0A0D2UUH0/581-626  OS Skermanella aerolata KACC 11604
#=GS A0A0D2UUH0/581-626  DE Regulatory protein
#=GS A0A0D2UUH0/581-626  DR GENE3D; bf1f3a1172c5c39fd78fd4c2ac1b0204/581-626; 
#=GS A0A0D2UUH0/581-626  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella; Skermanella aerolata; 
#=GS W9H3X4/592-637      AC W9H3X4
#=GS W9H3X4/592-637      OS Skermanella stibiiresistens SB22
#=GS W9H3X4/592-637      DE Regulatory protein
#=GS W9H3X4/592-637      DR GENE3D; d7c45107660d956a13c11d90bc897f4f/592-637; 
#=GS W9H3X4/592-637      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella; Skermanella stibiiresistens; 
#=GS P24426/307-352      AC P24426
#=GS P24426/307-352      OS Rhizobium leguminosarum bv. trifolii
#=GS P24426/307-352      DE Nif-specific regulatory protein
#=GS P24426/307-352      DR GENE3D; e036dd7baece363f4a3b38ac8ade0af3/307-352; 
#=GS P24426/307-352      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium; Rhizobium leguminosarum; 
#=GS G7Z962/580-632      AC G7Z962
#=GS G7Z962/580-632      OS Azospirillum lipoferum 4B
#=GS G7Z962/580-632      DE Nif-specific transcriptional regulator NifA
#=GS G7Z962/580-632      DR GENE3D; ef461496d920fc1d00b47199d22f7a4b/580-632; 
#=GS G7Z962/580-632      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum; Azospirillum lipoferum; 
#=GS G7DCV4/528-582      AC G7DCV4
#=GS G7DCV4/528-582      OS Bradyrhizobium japonicum USDA 6
#=GS G7DCV4/528-582      DE Nif-specific regulatory protein
#=GS G7DCV4/528-582      DR GENE3D; afe1686f10211a34134fb72127676880/528-582; 
#=GS G7DCV4/528-582      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium japonicum; 
#=GS Q9AMY3/551-605      AC Q9AMY3
#=GS Q9AMY3/551-605      OS Bradyrhizobium japonicum
#=GS Q9AMY3/551-605      DE ATPase AAA
#=GS Q9AMY3/551-605      DR GENE3D; 3e7c496f3d68183eb25f8b5e12084004/551-605; 
#=GS Q9AMY3/551-605      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium japonicum; 
#=GS A0A1L5M4N7/551-605  AC A0A1L5M4N7
#=GS A0A1L5M4N7/551-605  OS Bradyrhizobium diazoefficiens
#=GS A0A1L5M4N7/551-605  DE Nif-specific transcriptional activator NifA
#=GS A0A1L5M4N7/551-605  DR GENE3D; 3e7c496f3d68183eb25f8b5e12084004/551-605; 
#=GS A0A1L5M4N7/551-605  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium; Bradyrhizobium diazoefficiens; 
#=GF TC 99.0 2.9E-32
#=GF SQ 13
P05407/528-582              G---TVLVSGARMADRERVVAAMEKSGWVQAKAARLLGLTPRQVGYALRKYGIEIKRF
P30667/573-625              P-----LDEPESGSLRDRLLWAMERTGWVQAKAARLLGMTTRQVSYALRKYNIEIKRF
A0A160JGH5/569-621          P-----LDEPESGPLRDRLVWAMERTGWVQAKAARLLGMTTRQVSYALRKYNIEIKRF
P09133/568-615              ----------PRQSEKEQLLQAMERSGWVQAKAARLLNLTPRQVGYALRKYDIDIKRF
A0A1A5SXW6/551-607          APVRVALVSDAKMTDRERLIAAMERSGWVQAKAARLLGLTPRQIGYALRKYGIEIKC-
Q9EYV2/550-603              ----LGLVSDATMTDRERLIAAMERSGWVQAKAARLLGLTPRQIGYALRKYGIEIKNL
A0A0D2UUH0/581-626          ------------TTPRDRLLWAMERTGWVQAKAGRLLGLTTRQVSYALRKYNIEIKRF
W9H3X4/592-637              ------------TTPRDRLLWAMERTGWVQAKAGRLLGLTTRQVSYALRKYNIEIKRF
P24426/307-352              -----------GLIGRERLEQAMATAGWVQAKAARLLGRTPRQVGYSLRRHGIERKV-
G7Z962/580-632              P-----LDEPESGPLRDRLVWAMERTGWVQAKAARLLGMTTRQVSYALRKYNIEIKRF
G7DCV4/528-582              G---TVLVSGARMADRERVVAAMEKSGWVQAKAARLLGLTPRQVGYALRKYGIEIKRF
Q9AMY3/551-605              G---TVLVSGARMADRERVVAAMEKSGWVQAKAARLLGLTPRQVGYALRKYGIEIKRF
A0A1L5M4N7/551-605          G---TVLVSGARMADRERVVAAMEKSGWVQAKAARLLGLTPRQVGYALRKYGIEIKRF
#=GC scorecons              1000003121223438787439976599999997999759699769799885987955
#=GC scorecons_70           _______________****__****_************_*_***_******_****__
#=GC scorecons_80           _______________*_*___***__************_*_***_******_****__
#=GC scorecons_90           _______________*_*___**___*******_***__*_**__*_****_**_*__
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