# STOCKHOLM 1.0 #=GF ID 1.10.10.60/FF/123826 #=GF DE Marine sediment metagenome DNA, contig: S01H1_S24292 #=GF AC 1.10.10.60/FF/123826 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 45.221 #=GS A0A0S3PWZ7/402-454 AC A0A0S3PWZ7 #=GS A0A0S3PWZ7/402-454 OS Variibacter gotjawalensis #=GS A0A0S3PWZ7/402-454 DE Nitrogen regulation protein NR(I) #=GS A0A0S3PWZ7/402-454 DR GENE3D; 0c4080a07eb658ba920bbd59f5932e27/402-454; #=GS A0A0S3PWZ7/402-454 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Variibacter; Variibacter gotjawalensis; #=GS A0A0P6W7J4/401-455 AC A0A0P6W7J4 #=GS A0A0P6W7J4/401-455 OS Prosthecomicrobium hirschii #=GS A0A0P6W7J4/401-455 DE AAA family ATPase #=GS A0A0P6W7J4/401-455 DR GENE3D; 1102f29efc103c9fda5c79677578202f/401-455; #=GS A0A0P6W7J4/401-455 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Prosthecomicrobium; Prosthecomicrobium hirschii; #=GS X0VAP9/199-254 AC X0VAP9 #=GS X0VAP9/199-254 OS marine sediment metagenome #=GS X0VAP9/199-254 DE Uncharacterized protein #=GS X0VAP9/199-254 DR GENE3D; 12f402b9fd0780509feb7839221c9215/199-254; #=GS X0VAP9/199-254 DR ORG; marine sediment metagenome; #=GS A0A0Q7U0M3/403-455 AC A0A0Q7U0M3 #=GS A0A0Q7U0M3/403-455 OS Pseudolabrys sp. Root1462 #=GS A0A0Q7U0M3/403-455 DE AAA family ATPase #=GS A0A0Q7U0M3/403-455 DR GENE3D; 1b7bab9d28ef9654054dc475a0a127a2/403-455; #=GS A0A0Q7U0M3/403-455 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Pseudolabrys; Pseudolabrys sp. Root1462; #=GS A0A0P8ALW1/395-451 AC A0A0P8ALW1 #=GS A0A0P8ALW1/395-451 OS Roseibaca calidilacus #=GS A0A0P8ALW1/395-451 DE Nitrogen-responsive two component signal transduction system sigma54-dependent response regulator Nt #=GS A0A0P8ALW1/395-451 DR GENE3D; 218f6bc3b3409597110ef0403790498c/395-451; #=GS A0A0P8ALW1/395-451 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibaca; Roseibaca calidilacus; #=GS A0A0D6JIC2/400-455 AC A0A0D6JIC2 #=GS A0A0D6JIC2/400-455 OS Candidatus Filomicrobium marinum #=GS A0A0D6JIC2/400-455 DE Nitrogen assimilation regulatory protein NtrX #=GS A0A0D6JIC2/400-455 DR GENE3D; 226609769799ecd8ae01f0c83bd3c510/400-455; #=GS A0A0D6JIC2/400-455 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium; Candidatus Filomicrobium marinum; #=GS A0A1M5FFT3/399-453 AC A0A1M5FFT3 #=GS A0A1M5FFT3/399-453 OS Kaistia soli DSM 19436 #=GS A0A1M5FFT3/399-453 DE Two-component system, NtrC family, nitrogen regulation response regulator NtrX #=GS A0A1M5FFT3/399-453 DR GENE3D; 23dac0512d7414bb1e55cea80dc81e54/399-453; #=GS A0A1M5FFT3/399-453 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Kaistia; Kaistia soli; #=GS A0A059FCM1/402-455 AC A0A059FCM1 #=GS A0A059FCM1/402-455 OS Hyphomonas hirschiana VP5 #=GS A0A059FCM1/402-455 DE Sigma-54 dependent DNA-binding response regulator #=GS A0A059FCM1/402-455 DR GENE3D; 25f5538ee828e7e750e4d343afd3da15/402-455; #=GS A0A059FCM1/402-455 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas; Hyphomonas hirschiana; #=GS Q0C0N5/402-455 AC Q0C0N5 #=GS Q0C0N5/402-455 OS Hyphomonas neptunium ATCC 15444 #=GS Q0C0N5/402-455 DE Sigma-54 dependent DNA-binding response regulator #=GS Q0C0N5/402-455 DR GENE3D; 25f5538ee828e7e750e4d343afd3da15/402-455; #=GS Q0C0N5/402-455 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas; Hyphomonas neptunium; #=GS A0A127EYE3/404-456 AC A0A127EYE3 #=GS A0A127EYE3/404-456 OS Rhodoplanes sp. Z2-YC6860 #=GS A0A127EYE3/404-456 DE Nitrogen assimilation regulatory protein NtrX #=GS A0A127EYE3/404-456 DR GENE3D; 26dd06754c6729d3d2500a6b35db45ca/404-456; #=GS A0A127EYE3/404-456 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodoplanes; Rhodoplanes sp. Z2-YC6860; #=GS A0A143DEI1/405-461 AC A0A143DEI1 #=GS A0A143DEI1/405-461 OS Haematospirillum jordaniae #=GS A0A143DEI1/405-461 DE AAA family ATPase #=GS A0A143DEI1/405-461 DR GENE3D; 2f8ba28ea642633a7e39695b9a84d484/405-461; #=GS A0A143DEI1/405-461 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Haematospirillum; Haematospirillum jordaniae; #=GS X0UUP6/92-149 AC X0UUP6 #=GS X0UUP6/92-149 OS marine sediment metagenome #=GS X0UUP6/92-149 DE Uncharacterized protein #=GS X0UUP6/92-149 DR GENE3D; 366ebea22f4b8eb04a1e3a15c075f0c6/92-149; #=GS X0UUP6/92-149 DR ORG; marine sediment metagenome; #=GS V4R5H6/400-455 AC V4R5H6 #=GS V4R5H6/400-455 OS Lutibaculum baratangense AMV1 #=GS V4R5H6/400-455 DE Nitrogen regulation protein NtrX #=GS V4R5H6/400-455 DR GENE3D; 44300f2d5d12a6e9b063d0e755d03769/400-455; #=GS V4R5H6/400-455 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum; Lutibaculum baratangense; #=GS V5SFU4/400-455 AC V5SFU4 #=GS V5SFU4/400-455 OS Hyphomicrobium nitrativorans NL23 #=GS V5SFU4/400-455 DE ATPase AAA #=GS V5SFU4/400-455 DR GENE3D; 56b90d213259cea1a617cc959302a982/400-455; #=GS V5SFU4/400-455 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium; Hyphomicrobium nitrativorans; #=GS A0A117S6X7/400-455 AC A0A117S6X7 #=GS A0A117S6X7/400-455 OS Alphaproteobacteria bacterium BRH_c36 #=GS A0A117S6X7/400-455 DE AAA family ATPase #=GS A0A117S6X7/400-455 DR GENE3D; 5ab8af608e6b7376e77121d1f9e0d77f/400-455; #=GS A0A117S6X7/400-455 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Alphaproteobacteria bacterium BRH_c36; #=GS A7INM4/402-455 AC A7INM4 #=GS A7INM4/402-455 OS Xanthobacter autotrophicus Py2 #=GS A7INM4/402-455 DE Two component, sigma54 specific, transcriptional regulator, Fis family #=GS A7INM4/402-455 DR GENE3D; 5af62dd4dad8f597001fd7d48caabf37/402-455; #=GS A7INM4/402-455 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter; Xanthobacter autotrophicus; #=GS A0A109BMG6/401-456 AC A0A109BMG6 #=GS A0A109BMG6/401-456 OS Hyphomicrobium sulfonivorans #=GS A0A109BMG6/401-456 DE Nitrogen regulation protein NtrX #=GS A0A109BMG6/401-456 DR GENE3D; 5c73cbcee162486ac4d1cc2aa5fcb21c/401-456; #=GS A0A109BMG6/401-456 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium; Hyphomicrobium sulfonivorans; #=GS A0A037UTS3/401-457 AC A0A037UTS3 #=GS A0A037UTS3/401-457 OS Rhodomicrobium udaipurense JA643 #=GS A0A037UTS3/401-457 DE ATPase AAA #=GS A0A037UTS3/401-457 DR GENE3D; 5fdb304e553948f028efcfc94b1ded88/401-457; #=GS A0A037UTS3/401-457 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium; Rhodomicrobium udaipurense; #=GS E3I5Z0/401-457 AC E3I5Z0 #=GS E3I5Z0/401-457 OS Rhodomicrobium vannielii ATCC 17100 #=GS E3I5Z0/401-457 DE Two component, sigma54 specific, transcriptional regulator, Fis family #=GS E3I5Z0/401-457 DR GENE3D; 5fdb304e553948f028efcfc94b1ded88/401-457; #=GS E3I5Z0/401-457 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium; Rhodomicrobium vannielii; #=GS A0A1E3VS67/402-458 AC A0A1E3VS67 #=GS A0A1E3VS67/402-458 OS Methyloceanibacter superfactus #=GS A0A1E3VS67/402-458 DE AAA family ATPase #=GS A0A1E3VS67/402-458 DR GENE3D; 721518b35297280ac3825ececb8b2df8/402-458; #=GS A0A1E3VS67/402-458 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter; Methyloceanibacter superfactus; #=GS D6ZYH3/402-455 AC D6ZYH3 #=GS D6ZYH3/402-455 OS Starkeya novella DSM 506 #=GS D6ZYH3/402-455 DE Two component, sigma54 specific, transcriptional regulator, Fis family #=GS D6ZYH3/402-455 DR GENE3D; 8ea26c6e7455da840def70c7c5b5ebcc/402-455; #=GS D6ZYH3/402-455 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya; Starkeya novella; #=GS A0A1E3W5E7/402-458 AC A0A1E3W5E7 #=GS A0A1E3W5E7/402-458 OS Methyloceanibacter methanicus #=GS A0A1E3W5E7/402-458 DE AAA family ATPase #=GS A0A1E3W5E7/402-458 DR GENE3D; 99e7505c1829667008f5f185bfe188f9/402-458; #=GS A0A1E3W5E7/402-458 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter; Methyloceanibacter methanicus; #=GS A0A1E2S257/400-455 AC A0A1E2S257 #=GS A0A1E2S257/400-455 OS Methyloligella halotolerans #=GS A0A1E2S257/400-455 DE Nitrogen assimilation regulatory protein #=GS A0A1E2S257/400-455 DR GENE3D; a2e766b33fd1a0ec7be02ffdb26736cd/400-455; #=GS A0A1E2S257/400-455 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloligella; Methyloligella halotolerans; #=GS A0A1E3WBX0/402-458 AC A0A1E3WBX0 #=GS A0A1E3WBX0/402-458 OS Methyloceanibacter marginalis #=GS A0A1E3WBX0/402-458 DE AAA family ATPase #=GS A0A1E3WBX0/402-458 DR GENE3D; a3207eafb8280a6b65ba855cb8c16f08/402-458; #=GS A0A1E3WBX0/402-458 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter; Methyloceanibacter marginalis; #=GS A0A1E3H6F7/224-277 AC A0A1E3H6F7 #=GS A0A1E3H6F7/224-277 OS Methylobrevis pamukkalensis #=GS A0A1E3H6F7/224-277 DE Nitrogen assimilation regulatory protein #=GS A0A1E3H6F7/224-277 DR GENE3D; b0dc02e02237408129ae732224978eab/224-277; #=GS A0A1E3H6F7/224-277 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobrevis; Methylobrevis pamukkalensis; #=GS N0B417/400-456 AC N0B417 #=GS N0B417/400-456 OS Hyphomicrobium denitrificans 1NES1 #=GS N0B417/400-456 DE Fis family two component sigma-54 specific transcriptional regulator #=GS N0B417/400-456 DR GENE3D; b6ea777f8ef62f29d8110cf1662bdead/400-456; #=GS N0B417/400-456 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium; Hyphomicrobium denitrificans; #=GS A0A062U2A3/402-455 AC A0A062U2A3 #=GS A0A062U2A3/402-455 OS Hyphomonas sp. T16B2 #=GS A0A062U2A3/402-455 DE ATPase AAA #=GS A0A062U2A3/402-455 DR GENE3D; cd0e25fb76911490f58b5b24eae4cc82/402-455; #=GS A0A062U2A3/402-455 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas; Hyphomonas sp. T16B2; #=GS A0A0K2DGK3/402-456 AC A0A0K2DGK3 #=GS A0A0K2DGK3/402-456 OS Chelatococcus sp. CO-6 #=GS A0A0K2DGK3/402-456 DE AAA family ATPase #=GS A0A0K2DGK3/402-456 DR GENE3D; d0cdd796960e222d6b16f0e51ba6d022/402-456; #=GS A0A0K2DGK3/402-456 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Chelatococcus; Chelatococcus sp. CO-6; #=GS A0A0A8K471/402-458 AC A0A0A8K471 #=GS A0A0A8K471/402-458 OS Methyloceanibacter caenitepidi #=GS A0A0A8K471/402-458 DE Nitrogen regulation protein NtrX #=GS A0A0A8K471/402-458 DR GENE3D; d8c6a2b5d6894b3b4bd0d53c5452a0b5/402-458; #=GS A0A0A8K471/402-458 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter; Methyloceanibacter caenitepidi; #=GS C6XJQ3/399-453 AC C6XJQ3 #=GS C6XJQ3/399-453 OS Hirschia baltica ATCC 49814 #=GS C6XJQ3/399-453 DE Two component, sigma54 specific, transcriptional regulator, Fis family #=GS C6XJQ3/399-453 DR GENE3D; e908aab32533ace034fed6f5ae1ee196/399-453; #=GS C6XJQ3/399-453 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hirschia; Hirschia baltica; #=GS F8J7H7/400-456 AC F8J7H7 #=GS F8J7H7/400-456 OS Hyphomicrobium sp. MC1 #=GS F8J7H7/400-456 DE Two-component sigma-54 specific nitrogen transcriptional regulator, Fis subfamily N-terminal response receiver #=GS F8J7H7/400-456 DR GENE3D; ed9eb7e5199b58ca1efedaf1098884eb/400-456; #=GS F8J7H7/400-456 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium; Hyphomicrobium sp. MC1; #=GS Q04849/401-454 AC Q04849 #=GS Q04849/401-454 OS Azorhizobium caulinodans ORS 571 #=GS Q04849/401-454 DE Nitrogen assimilation regulatory protein NtrX #=GS Q04849/401-454 DR GENE3D; f0e0c7b9c5d697fc06cd8cff75a1415e/401-454; #=GS Q04849/401-454 DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium; Azorhizobium caulinodans; #=GF TC 122.1 4.6E-39 #=GF SQ 32 A0A0S3PWZ7/402-454 ---LMGLPLREAREVFEREYLVAQISRFGGNISRTAEFVGMERSALHRKLKALGIG-- A0A0P6W7J4/401-455 -EHLMSLPLRDAREIFEREYLVAQINRFGGNISRTAEFVGMERSALHRKLKSLGVN-- X0VAP9/199-254 -EHLMSLTLRDAREIFEREYLVAQVNRFGGNISRTAEFVGMERSALHRKLRALGVNS- A0A0Q7U0M3/403-455 ---LMGLPLRDAREVFEREYLVAQISRFGGNISRTAEFVGMERSALHRKLKALGIG-- A0A0P8ALW1/395-451 SGSLATLPLREARELFEREYLLAQINRFGGNISRTASFVGMERSALHRKLKSLGVNT- A0A0D6JIC2/400-455 -EHLMSLPLREAREIFEREYLLAQINRFGGNISRTAEFVGMERSALHRKLRALGVSS- A0A1M5FFT3/399-453 -EHLMSLPLRDAREIFEREYLTAQVNRFGGNISRTAEFVGMERSALHRKLKSLGVG-- A0A059FCM1/402-455 ---LVGLSLRDAREQFEREYLTLQITRFNGNISRTAEFIGMERSALHRKLKALGIST- Q0C0N5/402-455 ---LVGLSLRDAREQFEREYLTLQITRFNGNISRTAEFIGMERSALHRKLKALGIST- A0A127EYE3/404-456 ---LMGLPLREARELFEREYLMAQINRFGGNISRTAEFVGMERSALHRKLKALGIG-- A0A143DEI1/405-461 -AEIMSLPLRDAREMFEREYLLAQVTRFNGNISRTAEFIGMERSALHRKLKNLGVSSE X0UUP6/92-149 SEHLMSLPLREAREIFEREYLLAQINRFGGNISRTAEFVGMERSALHRKLRALGVSSE V4R5H6/400-455 -EHLMALPLRDAREIFEREYLIAQINRFGGNISRTAEFIGMERSALHRKLKSLGIGS- V5SFU4/400-455 -EHLMSLPLREAREIFEREYLLAQINRFGGNISRTAEFVGMERSALHRKLRALGVSS- A0A117S6X7/400-455 -EHLMSLPLREAREIFEREYLLAQINRFGGNISRTAEFVGMERSALHRKLRALGVSS- A7INM4/402-455 --HLMGLPLREAREVFEREYLAAQINRFGGNISRTAEFVGMERSALHRKLKALGVG-- A0A109BMG6/401-456 -EHLMSLPLREAREIFEREYLLAQINRFGGNISRTAEFVGMERSALHRKLRALGVSS- A0A037UTS3/401-457 -EHLMSLPLRDAREIFEREYLMAQINRFGGNISRTAEFVGMERSALHRKLRALGVNSN E3I5Z0/401-457 -EHLMSLPLRDAREIFEREYLMAQINRFGGNISRTAEFVGMERSALHRKLRALGVNSN A0A1E3VS67/402-458 -EHLMSLPLRDAREIFEREYLLAQVNRFGGNISRTAEFVGMERSALHRKLRALGVNSH D6ZYH3/402-455 --HLMGLPLRDAREVFEREYLVAQISRFGGNISRTAEFVGMERSALHRKLKALGIG-- A0A1E3W5E7/402-458 -EHLMSLPLRDAREIFEREYLLAQVNRFGGNISRTAEFVGMERSALHRKLRALGVNSN A0A1E2S257/400-455 -EHLMSLPLRDAREIFEREYLLAQVNRFGGNISRTAEFIGMERSALHRKLRALGVNA- A0A1E3WBX0/402-458 -EHLMSLPLRDAREIFEREYLLAQVNRFGGNISRTAEFVGMERSALHRKLRALGVNSN A0A1E3H6F7/224-277 --HLMALPLRDAREIFEREYLTAQINRFGGNISRTAEFVGMERSALHRKLKSLGIA-- N0B417/400-456 -EHLMSLPLREAREIFEREYLLAQINRFGGNISRTAEFVGMERSALHRKLRALGVSSE A0A062U2A3/402-455 ---LVGLSLRDAREQFEREYLALQITRFNGNISRTAEFIGMERSALHRKLKALGVNS- A0A0K2DGK3/402-456 --KLMSLPLRDAREIFEREYLIAQINRFSGNISRTAEFIGMERSALHRKLKSLGIGS- A0A0A8K471/402-458 -EHLMSLPLRDAREIFEREYLLAQVNRFGGNISRTAEFVGMERSALHRKLRALGVNSN C6XJQ3/399-453 ---TISLPLREAREKFEREYLTLQITRFGGNISRTAAFIGMERSALHRKLKALGVDTS F8J7H7/400-456 -EHLMSLPLREAREIFEREYLLAQINRFGGNISRTAEFVGMERSALHRKLRALGVSSE Q04849/401-454 --HLMGLPLREAREVFEREYLAAQINRFGGNISRTAEFVGMERSALHRKLKALGVG-- #=GC scorecons 0237659799799949999994697699699999997979999999999976997430 #=GC scorecons_70 ___**_********_******_***_*****************************___ #=GC scorecons_80 ___*__********_******__**_**_**********************_***___ #=GC scorecons_90 ______*_**_***_******__*__**_*******_*_***********__**____ //