# STOCKHOLM 1.0
#=GF ID 1.10.10.60/FF/123537
#=GF DE Homeobox protein SEBOX
#=GF AC 1.10.10.60/FF/123537
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 59.641
#=GS P70368/12-79       AC P70368
#=GS P70368/12-79       OS Mus musculus
#=GS P70368/12-79       DE Homeobox protein SEBOX
#=GS P70368/12-79       DR GENE3D; ae3ff5dd8f75a32f362dd09b5c7ba9d3/12-79; 
#=GS P70368/12-79       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS P70368/12-79       DR GO; GO:0009792; GO:0048477; 
#=GS Q9HB31/32-107      AC Q9HB31
#=GS Q9HB31/32-107      OS Homo sapiens
#=GS Q9HB31/32-107      DE Homeobox protein SEBOX
#=GS Q9HB31/32-107      DR GENE3D; 8b4ef2bbcbb36b8e74eb06424e4e9a99/32-107; 
#=GS Q9HB31/32-107      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS F6T8T6/6-81        AC F6T8T6
#=GS F6T8T6/6-81        OS Homo sapiens
#=GS F6T8T6/6-81        DE Homeobox protein SEBOX
#=GS F6T8T6/6-81        DR GENE3D; cfc3f7ea450203a2f04b4fa27a614e22/6-81; 
#=GS F6T8T6/6-81        DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS I3MUG5/11-80       AC I3MUG5
#=GS I3MUG5/11-80       OS Ictidomys tridecemlineatus
#=GS I3MUG5/11-80       DE Uncharacterized protein
#=GS I3MUG5/11-80       DR GENE3D; 05333ff9f4e7048d757b96b850e1fb1e/11-80; 
#=GS I3MUG5/11-80       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Ictidomys; Ictidomys tridecemlineatus; 
#=GS W5Q994/29-100      AC W5Q994
#=GS W5Q994/29-100      OS Ovis aries
#=GS W5Q994/29-100      DE Uncharacterized protein
#=GS W5Q994/29-100      DR GENE3D; 0af4bc47c8bc803dad0302d8f35bcfb7/29-100; 
#=GS W5Q994/29-100      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries; 
#=GS G3V797/16-80       AC G3V797
#=GS G3V797/16-80       OS Rattus norvegicus
#=GS G3V797/16-80       DE Homeobox protein SEBOX
#=GS G3V797/16-80       DR GENE3D; 1179e03453fcd25ff271ae57a048540c/16-80; 
#=GS G3V797/16-80       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS A0A096P387/28-103  AC A0A096P387
#=GS A0A096P387/28-103  OS Papio anubis
#=GS A0A096P387/28-103  DE Uncharacterized protein
#=GS A0A096P387/28-103  DR GENE3D; 2385cb8af3e4058e2b6187c9b0ee344f/28-103; 
#=GS A0A096P387/28-103  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Papio; Papio anubis; 
#=GS Q9ERS8/16-80       AC Q9ERS8
#=GS Q9ERS8/16-80       OS Rattus norvegicus
#=GS Q9ERS8/16-80       DE Homeobox protein SEBOX
#=GS Q9ERS8/16-80       DR GENE3D; 2a276f066c2c9320e1fc632e0e83644d/16-80; 
#=GS Q9ERS8/16-80       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS S7Q0N6/105-174     AC S7Q0N6
#=GS S7Q0N6/105-174     OS Myotis brandtii
#=GS S7Q0N6/105-174     DE Homeobox protein SEBOX
#=GS S7Q0N6/105-174     DR GENE3D; 2c9208e1aa2384d40e75671c7201b520/105-174; 
#=GS S7Q0N6/105-174     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Myotis; Myotis brandtii; 
#=GS H2QCH2/32-107      AC H2QCH2
#=GS H2QCH2/32-107      OS Pan troglodytes
#=GS H2QCH2/32-107      DE Uncharacterized protein
#=GS H2QCH2/32-107      DR GENE3D; 2de9273c66488bf18f215d9165936cb9/32-107; 
#=GS H2QCH2/32-107      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan troglodytes; 
#=GS I3LKQ4/33-100      AC I3LKQ4
#=GS I3LKQ4/33-100      OS Sus scrofa
#=GS I3LKQ4/33-100      DE Uncharacterized protein
#=GS I3LKQ4/33-100      DR GENE3D; 35818dd7beb6e97d1cba96ad9bf40f01/33-100; 
#=GS I3LKQ4/33-100      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Suina; Suidae; Sus; Sus scrofa; 
#=GS F1PUN1/29-101      AC F1PUN1
#=GS F1PUN1/29-101      OS Canis lupus familiaris
#=GS F1PUN1/29-101      DE Uncharacterized protein
#=GS F1PUN1/29-101      DR GENE3D; 4b5a3bd4d45a7c320fde6843ccec688c/29-101; 
#=GS F1PUN1/29-101      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis; Canis lupus; Canis lupus familiaris; 
#=GS L5JQY8/16-81       AC L5JQY8
#=GS L5JQY8/16-81       OS Pteropus alecto
#=GS L5JQY8/16-81       DE Homeobox protein SEBOX
#=GS L5JQY8/16-81       DR GENE3D; 4d51f1f24964c4f5dc4a2546716689ac/16-81; 
#=GS L5JQY8/16-81       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Chiroptera; Megachiroptera; Pteropodidae; Pteropodinae; Pteropus; Pteropus alecto; 
#=GS G1LEL8/25-100      AC G1LEL8
#=GS G1LEL8/25-100      OS Ailuropoda melanoleuca
#=GS G1LEL8/25-100      DE Uncharacterized protein
#=GS G1LEL8/25-100      DR GENE3D; 4dd9356eaf4675aceec431b067c65ff3/25-100; 
#=GS G1LEL8/25-100      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda; Ailuropoda melanoleuca; 
#=GS H0V5L6/34-108      AC H0V5L6
#=GS H0V5L6/34-108      OS Cavia porcellus
#=GS H0V5L6/34-108      DE Uncharacterized protein
#=GS H0V5L6/34-108      DR GENE3D; 57a28eb6c0e82f630ad1fc65dbf92433/34-108; 
#=GS H0V5L6/34-108      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Rodentia; Hystricomorpha; Caviidae; Cavia; Cavia porcellus; 
#=GS F7ISN3/33-105      AC F7ISN3
#=GS F7ISN3/33-105      OS Callithrix jacchus
#=GS F7ISN3/33-105      DE Uncharacterized protein
#=GS F7ISN3/33-105      DR GENE3D; 588dc4d16d1f505462427c46fd059d29/33-105; 
#=GS F7ISN3/33-105      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix; Callithrix jacchus; 
#=GS G1PKA0/11-80       AC G1PKA0
#=GS G1PKA0/11-80       OS Myotis lucifugus
#=GS G1PKA0/11-80       DE Uncharacterized protein
#=GS G1PKA0/11-80       DR GENE3D; 5ceff96319ab7c53b1496da1f5fd6215/11-80; 
#=GS G1PKA0/11-80       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Myotis; Myotis lucifugus; 
#=GS M3W9I4/26-100      AC M3W9I4
#=GS M3W9I4/26-100      OS Felis catus
#=GS M3W9I4/26-100      DE Uncharacterized protein
#=GS M3W9I4/26-100      DR GENE3D; 8e3cc1b9ed25165f0f716e2b70ec9bad/26-100; 
#=GS M3W9I4/26-100      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis; Felis catus; 
#=GS A0A0D9R4S0/28-103  AC A0A0D9R4S0
#=GS A0A0D9R4S0/28-103  OS Chlorocebus sabaeus
#=GS A0A0D9R4S0/28-103  DE Uncharacterized protein
#=GS A0A0D9R4S0/28-103  DR GENE3D; 901656fe8f90561724a372ca77ba0c99/28-103; 
#=GS A0A0D9R4S0/28-103  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Chlorocebus; Chlorocebus sabaeus; 
#=GS F6VZ51/24-92       AC F6VZ51
#=GS F6VZ51/24-92       OS Equus caballus
#=GS F6VZ51/24-92       DE Uncharacterized protein
#=GS F6VZ51/24-92       DR GENE3D; 96328293c53501ea2da7847fb84d4954/24-92; 
#=GS F6VZ51/24-92       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Perissodactyla; Equidae; Equus; Equus; Equus caballus; 
#=GS F1MK59/32-101      AC F1MK59
#=GS F1MK59/32-101      OS Bos taurus
#=GS F1MK59/32-101      DE Uncharacterized protein
#=GS F1MK59/32-101      DR GENE3D; 9adad71070bd6088a5f9ffdb0f38b2e9/32-101; 
#=GS F1MK59/32-101      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GS G1QNN1/30-104      AC G1QNN1
#=GS G1QNN1/30-104      OS Nomascus leucogenys
#=GS G1QNN1/30-104      DE Uncharacterized protein
#=GS G1QNN1/30-104      DR GENE3D; d7aa6f009c3998d3d43a6f9960b12b9c/30-104; 
#=GS G1QNN1/30-104      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hylobatidae; Nomascus; Nomascus leucogenys; 
#=GS H2RF05/28-103      AC H2RF05
#=GS H2RF05/28-103      OS Pan troglodytes
#=GS H2RF05/28-103      DE Uncharacterized protein
#=GS H2RF05/28-103      DR GENE3D; f5ab61e0db7371ca7719b338e42aac6b/28-103; 
#=GS H2RF05/28-103      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan troglodytes; 
#=GF TC 151.2 8.0E-48
#=GF SQ 23
P70368/12-79               -------ASGLGPHRRKRTTFSVGQLVELERVFAARPYPDISTREHLAQVTHLPEAKIQVWFQNRRAKRIKDRKP--
Q9HB31/32-107              DASSADGGSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSG-
F6T8T6/6-81                DASSADGGSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNISTHEHLAWVTCLPEAKVQVWFQKRWAKIIKNRKSG-
I3MUG5/11-80               -----GHASGFGPHRRKRITFSVGQLLELERVFAARPYPDIGTREHLARLTCLPEAKIQVWFQNRRAKKIKNRNP--
W5Q994/29-100              ---PAGHASGVGPHRRKRTTFSRGQLLELERVFAARPYPDISTREHLARVTSLPEAKIQVWFQNRRAKRIKNRKP--
G3V797/16-80               -----------GPHRRKRTTFSVGQLLELERVFAARPYPDISTREHLAQITHLPEAKIQVWFQNRRAKRIKDRKPG-
A0A096P387/28-103          DASSADGGSGLGSHQRKRTTFSKGQLLELERAFAAWPYPDISTREHLAQVTRLPEAKIQVWFQNRRAKRIKNRKSR-
Q9ERS8/16-80               -----------GPHRRKRTTFSVGQLLELERVFAARPYPDISTREHLAQITHLPEAKIQVWFQNRRAKRIKDRKPG-
S7Q0N6/105-174             -----GHASGLGPHRRKRTTFSRGQLLELERVFAAWPYPDIGTREHLAQVTCLPEAKIQVWFQNRRAKRIKNRKP--
H2QCH2/32-107              DASSADGGSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNISTREHLAWVTRLPEAKVQVWFQKRRAKMIKNRKSG-
I3LKQ4/33-100              ------HASGLGPHRRKRTTFSRGQLLELERVFAARPYPDIGTREHLARVTSLPEAKIQVWFQNRRAKRIKNRE---
F1PUN1/29-101              ---STGHASGLGSHRRKRTTFSRGQLLELERVFAAWPYPDIGTREHLARVTCLPEDKIQVWFQNRRAKRIKNRKAG-
L5JQY8/16-81               ----------LGPHRRKRITFSKGQLLELERVFAARPYPDIGTREDLARVTCLPEAKIQVWFQNRRAKRIKTRKPG-
G1LEL8/25-100              DASSTGHASGLGSHRRKRTTFSRGQLLELERVFAAWPYPDIGTREHLARVTCLPEAKIQVWFQNRRAKRIKNRKAG-
H0V5L6/34-108              AAAPTDHASELGPHRRKRITFSVGQLLELERVFAAWPYPDIGTREHLARVTCLPEAKIQVWFQNRRAKRIKHRKP--
F7ISN3/33-105              ----HGGASRLGPHRRKQTAFSKGQLLELERVFAAWPYPDISTCEHLARVTHLPEAKIQVWFQNYWAKRIKNRKSRS
G1PKA0/11-80               -----GHASGLGPHRRKRTTFSRGQLLELERVFAARPYPDIGTREHLAQVTCLPEAKIQVWFQNRRAKRIKNRKP--
M3W9I4/26-100              -ASSTGHASGLGPHRRKRTTFSRGQLLELERVFAARPYPDIGTREHLARVTCLPEAKIQVWFQNRRAKRIKNTKAG-
A0A0D9R4S0/28-103          DASSADGGSGLGSHQKKRTTFSKGQLLELERAFAAWPYPDISTREHLAQVTRLPEAKIQVWFQNRRAKRIKNRKSR-
F6VZ51/24-92               -----GHASGLGPHRRKRTTFSRGQLLELERVFAAWPYPDIGTREHLAQVTCLPEAKIQVWFQNRRAKRIKNGK---
F1MK59/32-101              -----GHASGLGPHRRKRTTFSRGQLLELERVFAARPYPDIGTREHLARVTSLPEAKIQVWFQNRRAKRIKNRKP--
G1QNN1/30-104              DASSADGGSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNISTCEHLAWVTRLPEAKIQVWFQNRQAKRIKNRKL--
H2RF05/28-103              DASSADGGSGLGSHRRKRTTFSKGQLLELERAFAAWPYPNISTREHLAWVTRLPEAKVQVWFQKRRAKMIKNRKSG-
#=GC scorecons             11111334656969889878994999899996999599979696989947949998979999978699699688420
#=GC scorecons_70          ________*_************_************_*****_******_**_****************_*****___
#=GC scorecons_80          ___________*_*********_********_***_***_*_*_****_**_*************_**_**_**___
#=GC scorecons_90          ___________*_*****_***_********_***_***_*_*_****__*_*****_*****_*_**_**______
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