# STOCKHOLM 1.0
#=GF ID 1.10.10.60/FF/103492
#=GF DE Sigma-54 dependent transcriptional regulator
#=GF AC 1.10.10.60/FF/103492
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 58.986
#=GS Q9KN48/474-529      AC Q9KN48
#=GS Q9KN48/474-529      OS Vibrio cholerae O1 biovar El Tor str. N16961
#=GS Q9KN48/474-529      DE Sigma-54 dependent transcriptional regulator
#=GS Q9KN48/474-529      DR GENE3D; f7c0a7e9e9c45ccaec0f665e4f88d9a4/474-529; 
#=GS Q9KN48/474-529      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS Q9KN48/474-529      DR GO; GO:0003700; GO:0006355; 
#=GS A0A0H6UYE2/14-69    AC A0A0H6UYE2
#=GS A0A0H6UYE2/14-69    OS Vibrio cholerae
#=GS A0A0H6UYE2/14-69    DE Sigma-54 dependent transcriptional regulator
#=GS A0A0H6UYE2/14-69    DR GENE3D; 0cfce617892b9776625cae53eaac3807/14-69; 
#=GS A0A0H6UYE2/14-69    DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A1C7FJG4/455-522  AC A0A1C7FJG4
#=GS A0A1C7FJG4/455-522  OS Vibrio scophthalmi
#=GS A0A1C7FJG4/455-522  DE Anaerobic nitric oxide reductase transcription regulator NorR
#=GS A0A1C7FJG4/455-522  DR GENE3D; 17c3f012e1930a2b5def2e37c24cff85/455-522; 
#=GS A0A1C7FJG4/455-522  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio scophthalmi; 
#=GS F7YT79/469-521      AC F7YT79
#=GS F7YT79/469-521      OS Vibrio anguillarum 775
#=GS F7YT79/469-521      DE Transcriptional regulator
#=GS F7YT79/469-521      DR GENE3D; 36a6975144851bba705f3ae98df271ac/469-521; 
#=GS F7YT79/469-521      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio anguillarum; 
#=GS A0A1L9L2C5/462-532  AC A0A1L9L2C5
#=GS A0A1L9L2C5/462-532  OS Vibrio vulnificus
#=GS A0A1L9L2C5/462-532  DE Transcriptional regulatory protein QseF
#=GS A0A1L9L2C5/462-532  DR GENE3D; 54454d7a17e235f01a93393c7e2df538/462-532; 
#=GS A0A1L9L2C5/462-532  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio vulnificus; 
#=GS A0A1L9L1U2/462-532  AC A0A1L9L1U2
#=GS A0A1L9L1U2/462-532  OS Vibrio fluvialis
#=GS A0A1L9L1U2/462-532  DE Transcriptional regulatory protein QseF
#=GS A0A1L9L1U2/462-532  DR GENE3D; 54454d7a17e235f01a93393c7e2df538/462-532; 
#=GS A0A1L9L1U2/462-532  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio fluvialis; 
#=GS D0IH22/450-525      AC D0IH22
#=GS D0IH22/450-525      OS Vibrio sp. RC586
#=GS D0IH22/450-525      DE Sigma-54 dependent transcriptional regulator
#=GS D0IH22/450-525      DR GENE3D; c4a42c390c84a79fb5fcbfdd2030e005/450-525; 
#=GS D0IH22/450-525      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio sp. RC586; 
#=GS A0A0H5ZSY8/436-491  AC A0A0H5ZSY8
#=GS A0A0H5ZSY8/436-491  OS Vibrio cholerae
#=GS A0A0H5ZSY8/436-491  DE Sigma-54 dependent transcriptional regulator
#=GS A0A0H5ZSY8/436-491  DR GENE3D; c8cace074bc58843d255bacebce256f6/436-491; 
#=GS A0A0H5ZSY8/436-491  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS F0LZM5/457-528      AC F0LZM5
#=GS F0LZM5/457-528      OS Vibrio furnissii NCTC 11218
#=GS F0LZM5/457-528      DE Sigma-54 dependent transcriptional regulator
#=GS F0LZM5/457-528      DR GENE3D; dcd1e61ee1cb427ddc08a259342bb0cd/457-528; 
#=GS F0LZM5/457-528      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio furnissii; 
#=GS A0A0H6W068/181-236  AC A0A0H6W068
#=GS A0A0H6W068/181-236  OS Vibrio cholerae
#=GS A0A0H6W068/181-236  DE Sigma-54 dependent transcriptional regulator
#=GS A0A0H6W068/181-236  DR GENE3D; ecd53d8c2bdacb48f1ad9b7175f596ea/181-236; 
#=GS A0A0H6W068/181-236  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS C3LUE1/474-529      AC C3LUE1
#=GS C3LUE1/474-529      OS Vibrio cholerae M66-2
#=GS C3LUE1/474-529      DE Sigma-54 dependent transcriptional regulator
#=GS C3LUE1/474-529      DR GENE3D; f7c0a7e9e9c45ccaec0f665e4f88d9a4/474-529; 
#=GS C3LUE1/474-529      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0H3QAP0/474-529  AC A0A0H3QAP0
#=GS A0A0H3QAP0/474-529  OS Vibrio cholerae B33
#=GS A0A0H3QAP0/474-529  DE Sigma-54 dependent transcriptional regulator
#=GS A0A0H3QAP0/474-529  DR GENE3D; f7c0a7e9e9c45ccaec0f665e4f88d9a4/474-529; 
#=GS A0A0H3QAP0/474-529  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0H3AFG8/474-529  AC A0A0H3AFG8
#=GS A0A0H3AFG8/474-529  OS Vibrio cholerae O395
#=GS A0A0H3AFG8/474-529  DE Sigma-54 dependent transcriptional regulator
#=GS A0A0H3AFG8/474-529  DR GENE3D; f7c0a7e9e9c45ccaec0f665e4f88d9a4/474-529; 
#=GS A0A0H3AFG8/474-529  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A023PRF8/474-529  AC A0A023PRF8
#=GS A0A023PRF8/474-529  OS Vibrio cholerae
#=GS A0A023PRF8/474-529  DE AAA family ATPase
#=GS A0A023PRF8/474-529  DR GENE3D; f7c0a7e9e9c45ccaec0f665e4f88d9a4/474-529; 
#=GS A0A023PRF8/474-529  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0H3ZQ46/474-529  AC A0A0H3ZQ46
#=GS A0A0H3ZQ46/474-529  OS Vibrio splendidus
#=GS A0A0H3ZQ46/474-529  DE Sigma-54 dependent transcriptional regulator
#=GS A0A0H3ZQ46/474-529  DR GENE3D; f7c0a7e9e9c45ccaec0f665e4f88d9a4/474-529; 
#=GS A0A0H3ZQ46/474-529  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio splendidus; 
#=GS A0A0K9UVH8/474-529  AC A0A0K9UVH8
#=GS A0A0K9UVH8/474-529  OS Vibrio cholerae 2740-80
#=GS A0A0K9UVH8/474-529  DE Sigma-54 dependent transcriptional regulator
#=GS A0A0K9UVH8/474-529  DR GENE3D; f7c0a7e9e9c45ccaec0f665e4f88d9a4/474-529; 
#=GS A0A0K9UVH8/474-529  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0X1L1T0/474-529  AC A0A0X1L1T0
#=GS A0A0X1L1T0/474-529  OS Vibrio cholerae MO10
#=GS A0A0X1L1T0/474-529  DE Sigma-54 dependent transcriptional regulator
#=GS A0A0X1L1T0/474-529  DR GENE3D; f7c0a7e9e9c45ccaec0f665e4f88d9a4/474-529; 
#=GS A0A0X1L1T0/474-529  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GF TC 146.7 8.8E-48
#=GF SQ 17
Q9KN48/474-529              --------------------NFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEIKT
A0A0H6UYE2/14-69            --------------------NFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEIKT
A0A1C7FJG4/455-522          --QMVTTLDDPHT-----E-SFVVIHDLKQALNEYEAIIITERLTHFAGDRAKAAESLGIPKRTLAYKCQKLEIKA
F7YT79/469-521              -----------------------VVDDLKQAVNEFESRIIRERLQYFAGDRAKAAQSLGIPKRTLAYKCQKLEIKT
A0A1L9L2C5/462-532          -----HDHETDSSAILNGEPNFAVIHDLKQAVSQFEAQIITERLTRFSGDRAKAAESLGIPKRTLAYKCLKLEIKA
A0A1L9L1U2/462-532          -----HDHETDSSAILNGEPNFAVIHDLKQAVSQFEAQIITERLTRFSGDRAKAAESLGIPKRTLAYKCLKLEIKA
D0IH22/450-525              PASIVEEESSSSASAVSGEPNFAVIHNLKQALNEFEAQIISERLTRFSGDRAKAAKSLGIPKRTLAYKCLKLEIKT
A0A0H5ZSY8/436-491          --------------------NFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEIKT
F0LZM5/457-528              ---MPQATQPQHARATTGQ-NYSVIHDLKQALSDFEEKIIRERLNHFSGDRAKAAQSLGIPKRTLAYKCQKLEIKA
A0A0H6W068/181-236          --------------------NFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEIKT
C3LUE1/474-529              --------------------NFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEIKT
A0A0H3QAP0/474-529          --------------------NFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEIKT
A0A0H3AFG8/474-529          --------------------NFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEIKT
A0A023PRF8/474-529          --------------------NFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEIKT
A0A0H3ZQ46/474-529          --------------------NFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEIKT
A0A0K9UVH8/474-529          --------------------NFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEIKT
A0A0X1L1T0/474-529          --------------------NFAVIHDLKQAVSQFEALIISERLNRFAGDRAKAAKSLGIPKRTLAYKCLKLEIKT
#=GC scorecons              0000000000011000011066598779999666896399599956969999999599999999999995999996
#=GC scorecons_70           ____________________**_**********_***_**_***_**_*******_*************_******
#=GC scorecons_80           _______________________********___**__**_***__*_*******_*************_*****_
#=GC scorecons_90           _______________________**__****___**__**_***__*_*******_*************_*****_
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