# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/184956
#=GF DE Transcription initiation factor IIF subunit alpha
#=GF AC 1.10.10.10/FF/184956
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 11.789
#=GS Q9SU25/463-542      AC Q9SU25
#=GS Q9SU25/463-542      OS Arabidopsis thaliana
#=GS Q9SU25/463-542      DE Transcription initiation factor IIF subunit alpha
#=GS Q9SU25/463-542      DR GENE3D; 3fbbd48433bea408ab7dc443415b8e10/463-542; 
#=GS Q9SU25/463-542      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9SU25/463-542      DR GO; GO:0005515; GO:0008022; 
#=GS A0A178V535/463-542  AC A0A178V535
#=GS A0A178V535/463-542  OS Arabidopsis thaliana
#=GS A0A178V535/463-542  DE Uncharacterized protein
#=GS A0A178V535/463-542  DR GENE3D; 23f3f95e9b2a3b91d20155681cdae43e/463-542; 
#=GS A0A178V535/463-542  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS M4C9A3/460-538      AC M4C9A3
#=GS M4C9A3/460-538      OS Brassica rapa subsp. pekinensis
#=GS M4C9A3/460-538      DE Uncharacterized protein
#=GS M4C9A3/460-538      DR GENE3D; b009f60dd20645e29eb63a2b271a9928/460-538; 
#=GS M4C9A3/460-538      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS D7M135/462-541      AC D7M135
#=GS D7M135/462-541      OS Arabidopsis lyrata subsp. lyrata
#=GS D7M135/462-541      DE Mutant TFIIF-alpha
#=GS D7M135/462-541      DR GENE3D; 6ba78023b1462cfe1154e4726a1857a6/462-541; 
#=GS D7M135/462-541      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; rosids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GF TC 174.9 5.0E-56
#=GF SQ 4
Q9SU25/463-542              KAEPASAPAS-SSSAATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQNFVVLRE
A0A178V535/463-542          KAEPASAPAS-SSSAATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQNFVVLRE
M4C9A3/460-538              -AEPTPATASASASAATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFADILRKISKIQKNAGSQNFVVLR-
D7M135/462-541              KAEPASAPAA-SSSAATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQNFVVLRE
#=GC scorecons              299955959609599999999999999999999999999999999999999999999959999999999999999999992
#=GC scorecons_70           _***__*_**_*_*********************************************_*********************_
#=GC scorecons_80           _***__*_*__*_*********************************************_*********************_
#=GC scorecons_90           _***__*_*__*_*********************************************_*********************_
//