# STOCKHOLM 1.0 #=GF ID 1.10.10.10/FF/159564 #=GF DE RNA polymerase sigma factor #=GF AC 1.10.10.10/FF/159564 #=GF TP FunFam #=GF DR CATH: 4.2 #=GF DR DOPS: 49.300 #=GS 1ttyA00/1-87 AC P77994 #=GS 1ttyA00/1-87 OS Thermotoga maritima MSB8 #=GS 1ttyA00/1-87 DE RNA polymerase sigma factor SigA #=GS 1ttyA00/1-87 DR CATH; 1tty; A:313-399; #=GS 1ttyA00/1-87 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga; Thermotoga maritima; #=GS P77994/313-399 AC P77994 #=GS P77994/313-399 OS Thermotoga maritima MSB8 #=GS P77994/313-399 DE RNA polymerase sigma factor SigA #=GS P77994/313-399 DR GENE3D; 265bc7c685e3cf4a51f3d773d3dc8787/313-399; #=GS P77994/313-399 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga; Thermotoga maritima; #=GS F7YWL1/308-394 AC F7YWL1 #=GS F7YWL1/308-394 OS Pseudothermotoga thermarum DSM 5069 #=GS F7YWL1/308-394 DE RNA polymerase sigma factor SigA #=GS F7YWL1/308-394 DR GENE3D; 0d193626c32206337ff4089fb0f434e9/308-394; #=GS F7YWL1/308-394 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Pseudothermotoga; Pseudothermotoga thermarum; #=GS A0A0G2ZEZ9/312-398 AC A0A0G2ZEZ9 #=GS A0A0G2ZEZ9/312-398 OS Kosmotoga pacifica #=GS A0A0G2ZEZ9/312-398 DE RNA polymerase sigma factor SigA #=GS A0A0G2ZEZ9/312-398 DR GENE3D; 18a3b94e3394a6a3ce9f644b6f2691cd/312-398; #=GS A0A0G2ZEZ9/312-398 DR ORG; Bacteria; Thermotogae; Thermotogae; Kosmotogales; Kosmotogaceae; Kosmotoga; Kosmotoga pacifica; #=GS A0A182C7X8/310-396 AC A0A182C7X8 #=GS A0A182C7X8/310-396 OS Kosmotoga arenicorallina S304 #=GS A0A182C7X8/310-396 DE RNA polymerase sigma factor SigA #=GS A0A182C7X8/310-396 DR GENE3D; 28f6ebacd4aeb86408eba60f9f6d3f14/310-396; #=GS A0A182C7X8/310-396 DR ORG; Bacteria; Thermotogae; Thermotogae; Kosmotogales; Kosmotogaceae; Kosmotoga; Kosmotoga arenicorallina; #=GS A0A0X1KQD5/281-367 AC A0A0X1KQD5 #=GS A0A0X1KQD5/281-367 OS Pseudothermotoga hypogea DSM 11164 = NBRC 106472 #=GS A0A0X1KQD5/281-367 DE RNA polymerase sigma factor SigA #=GS A0A0X1KQD5/281-367 DR GENE3D; 37067bd6dfc30ca471facf5df4d7b205/281-367; #=GS A0A0X1KQD5/281-367 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Pseudothermotoga; Pseudothermotoga hypogea; #=GS I2F4S4/329-415 AC I2F4S4 #=GS I2F4S4/329-415 OS Mesotoga prima MesG1.Ag.4.2 #=GS I2F4S4/329-415 DE RNA polymerase sigma factor SigA #=GS I2F4S4/329-415 DR GENE3D; 41c5c807b33ab886977ad4453768f3b8/329-415; #=GS I2F4S4/329-415 DR ORG; Bacteria; Thermotogae; Thermotogae; Kosmotogales; Kosmotogaceae; Mesotoga; Mesotoga prima; #=GS N1JK41/329-415 AC N1JK41 #=GS N1JK41/329-415 OS Mesotoga infera #=GS N1JK41/329-415 DE RNA polymerase sigma factor SigA #=GS N1JK41/329-415 DR GENE3D; 41c5c807b33ab886977ad4453768f3b8/329-415; #=GS N1JK41/329-415 DR ORG; Bacteria; Thermotogae; Thermotogae; Kosmotogales; Kosmotogaceae; Mesotoga; Mesotoga infera; #=GS A0A1M5RPR6/286-370 AC A0A1M5RPR6 #=GS A0A1M5RPR6/286-370 OS Thermosipho atlanticus DSM 15807 #=GS A0A1M5RPR6/286-370 DE RNA polymerase primary sigma factor #=GS A0A1M5RPR6/286-370 DR GENE3D; 5f02d68884c79c669ad2379289518c9d/286-370; #=GS A0A1M5RPR6/286-370 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Fervidobacteriaceae; Thermosipho; Thermosipho atlanticus; #=GS A0A1B0VI85/287-371 AC A0A1B0VI85 #=GS A0A1B0VI85/287-371 OS Fervidobacterium islandicum #=GS A0A1B0VI85/287-371 DE RNA polymerase sigma factor SigA #=GS A0A1B0VI85/287-371 DR GENE3D; 771dfc1fe34c717409fe03514b9e3fe3/287-371; #=GS A0A1B0VI85/287-371 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Fervidobacteriaceae; Fervidobacterium; Fervidobacterium islandicum; #=GS C5CDI4/318-404 AC C5CDI4 #=GS C5CDI4/318-404 OS Kosmotoga olearia TBF 19.5.1 #=GS C5CDI4/318-404 DE RNA polymerase sigma factor SigA #=GS C5CDI4/318-404 DR GENE3D; 7895c183b322f0e6fd99b62dbadc1e2e/318-404; #=GS C5CDI4/318-404 DR ORG; Bacteria; Thermotogae; Thermotogae; Kosmotogales; Kosmotogaceae; Kosmotoga; Kosmotoga olearia; #=GS A0A1L7BKC7/286-370 AC A0A1L7BKC7 #=GS A0A1L7BKC7/286-370 OS Thermosipho melanesiensis #=GS A0A1L7BKC7/286-370 DE RNA polymerase sigma factor rpoD #=GS A0A1L7BKC7/286-370 DR GENE3D; a3a893d76080312ee5cdd70aed55155c/286-370; #=GS A0A1L7BKC7/286-370 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Fervidobacteriaceae; Thermosipho; Thermosipho melanesiensis; #=GS A6LLT9/286-370 AC A6LLT9 #=GS A6LLT9/286-370 OS Thermosipho melanesiensis BI429 #=GS A6LLT9/286-370 DE RNA polymerase sigma factor SigA #=GS A6LLT9/286-370 DR GENE3D; a3a893d76080312ee5cdd70aed55155c/286-370; #=GS A6LLT9/286-370 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Fervidobacteriaceae; Thermosipho; Thermosipho melanesiensis; #=GS A8F8P3/315-400 AC A8F8P3 #=GS A8F8P3/315-400 OS Pseudothermotoga lettingae TMO #=GS A8F8P3/315-400 DE RNA polymerase sigma factor SigA #=GS A8F8P3/315-400 DR GENE3D; a44082649721ef672c33b88c8b24e1bc/315-400; #=GS A8F8P3/315-400 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Pseudothermotoga; Pseudothermotoga lettingae; #=GS A0A101EVW2/315-401 AC A0A101EVW2 #=GS A0A101EVW2/315-401 OS Thermotoga sp. 50_1627 #=GS A0A101EVW2/315-401 DE RNA polymerase sigma factor SigA #=GS A0A101EVW2/315-401 DR GENE3D; a5718fc6f9069d1b843b88e13fad47d0/315-401; #=GS A0A101EVW2/315-401 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogaceae; Thermotoga; Thermotoga sp. 50_1627; #=GS A0A117MBU5/319-405 AC A0A117MBU5 #=GS A0A117MBU5/319-405 OS Thermotogales bacterium 46_20 #=GS A0A117MBU5/319-405 DE RNA polymerase sigma factor SigA #=GS A0A117MBU5/319-405 DR GENE3D; b2723cad26692299397539758c90c347/319-405; #=GS A0A117MBU5/319-405 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Thermotogales bacterium 46_20; #=GS H2J544/335-418 AC H2J544 #=GS H2J544/335-418 OS Marinitoga piezophila KA3 #=GS H2J544/335-418 DE RNA polymerase sigma factor SigA #=GS H2J544/335-418 DR GENE3D; bca6571aef87c46db38f13a177ba3f28/335-418; #=GS H2J544/335-418 DR ORG; Bacteria; Thermotogae; Thermotogae; Petrotogales; Marinitoga; Marinitoga piezophila; #=GS A0A1L7BSC2/335-418 AC A0A1L7BSC2 #=GS A0A1L7BSC2/335-418 OS Marinitoga sp. 1137 #=GS A0A1L7BSC2/335-418 DE RNA polymerase sigma factor rpoD #=GS A0A1L7BSC2/335-418 DR GENE3D; bca6571aef87c46db38f13a177ba3f28/335-418; #=GS A0A1L7BSC2/335-418 DR ORG; Bacteria; Thermotogae; Thermotogae; Petrotogales; Marinitoga; Marinitoga sp. 1137; #=GS A0A0H2SDA4/336-419 AC A0A0H2SDA4 #=GS A0A0H2SDA4/336-419 OS Marinitoga sp. 1197 #=GS A0A0H2SDA4/336-419 DE RNA polymerase sigma factor SigA #=GS A0A0H2SDA4/336-419 DR GENE3D; d3ce86e8550196f1d14bbf968d665027/336-419; #=GS A0A0H2SDA4/336-419 DR ORG; Bacteria; Thermotogae; Thermotogae; Petrotogales; Marinitoga; Marinitoga sp. 1197; #=GS A0A0H2SFQ0/336-419 AC A0A0H2SFQ0 #=GS A0A0H2SFQ0/336-419 OS Marinitoga sp. 1155 #=GS A0A0H2SFQ0/336-419 DE RNA polymerase sigma factor SigA #=GS A0A0H2SFQ0/336-419 DR GENE3D; d3ce86e8550196f1d14bbf968d665027/336-419; #=GS A0A0H2SFQ0/336-419 DR ORG; Bacteria; Thermotogae; Thermotogae; Petrotogales; Marinitoga; Marinitoga sp. 1155; #=GS A0A101HPQ8/330-416 AC A0A101HPQ8 #=GS A0A101HPQ8/330-416 OS Mesotoga prima #=GS A0A101HPQ8/330-416 DE RNA polymerase sigma factor SigA #=GS A0A101HPQ8/330-416 DR GENE3D; e11328e78d8ee91841fa3a796409b95b/330-416; #=GS A0A101HPQ8/330-416 DR ORG; Bacteria; Thermotogae; Thermotogae; Kosmotogales; Kosmotogaceae; Mesotoga; Mesotoga prima; #=GS A0A1E3G1A0/288-372 AC A0A1E3G1A0 #=GS A0A1E3G1A0/288-372 OS Fervidobacterium thailandensis #=GS A0A1E3G1A0/288-372 DE RNA polymerase sigma factor SigA #=GS A0A1E3G1A0/288-372 DR GENE3D; e26e059f6d9605be5226794355be8f42/288-372; #=GS A0A1E3G1A0/288-372 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Fervidobacteriaceae; Fervidobacterium; Fervidobacterium thailandensis; #=GS A0A1L7BFN1/286-370 AC A0A1L7BFN1 #=GS A0A1L7BFN1/286-370 OS Thermosipho sp. 1063 #=GS A0A1L7BFN1/286-370 DE RNA polymerase sigma factor rpoD #=GS A0A1L7BFN1/286-370 DR GENE3D; f7a3e0638e111c3d9be8eb4134cc9a14/286-370; #=GS A0A1L7BFN1/286-370 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Fervidobacteriaceae; Thermosipho; Thermosipho sp. 1063; #=GS A0A1L2EK61/286-370 AC A0A1L2EK61 #=GS A0A1L2EK61/286-370 OS Thermosipho sp. 1070 #=GS A0A1L2EK61/286-370 DE RNA polymerase sigma factor rpoD #=GS A0A1L2EK61/286-370 DR GENE3D; f7a3e0638e111c3d9be8eb4134cc9a14/286-370; #=GS A0A1L2EK61/286-370 DR ORG; Bacteria; Thermotogae; Thermotogae; Thermotogales; Fervidobacteriaceae; Thermosipho; Thermosipho sp. 1070; #=GF TC 171.0 1.4E-54 #=GF SQ 24 1ttyA00/1-87 KEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSLMDENEG P77994/313-399 KEAMRMLMREELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSLMDENEG F7YWL1/308-394 KEAMRMLMREELEKVLRTLNPREAMVLKMRYGLLDGKAKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKAIISLLDQGEK A0A0G2ZEZ9/312-398 EAAMKMLLREHIDQVLDTLSPREAMVLKMRYGLLDGKTKTLEEVGQFFNVTRERIRQIEVKALRKLRHPSRSKQLKALVGMLTSSKS A0A182C7X8/310-396 EAAMKMLLREHIDQVLDTLSPREAMVLKMRYGLLDGKTKTLEEVGQFFNVTRERIRQIEVKALRKLRHPSRSKQLKALVGMLTSSKS A0A0X1KQD5/281-367 KEAMRMLIREELEKVLKTLNPREAMVLKMRYGLLDGKAKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLITLLDDQEK I2F4S4/329-415 EAAMKMLLREQIDQILDTLSPREAMVLKMRYGLLDGKTKTLEEVGQFFNVTRERIRQIEVKALRKLRHPSRSKQLKALLGMLNTSKR N1JK41/329-415 EAAMKMLLREQIDQILDTLSPREAMVLKMRYGLLDGKTKTLEEVGQFFNVTRERIRQIEVKALRKLRHPSRSKQLKALLGMLNTSKR A0A1M5RPR6/286-370 KEAMRMLIREEVEKVLETLNDREKLVLKMRYGLTDGKAKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSRYLKVLFKMLDEE-- A0A1B0VI85/287-371 KEAIRTLMKEEIDKLLETLNDREKMVLKMRYGILDGKPKTLEEVGQYFGVTRERIRQIEVKALRKLRHPSRSRYLRLLQKLAEED-- C5CDI4/318-404 EAAIKMLLREQIDEVLDTLSPREAMVLKMRYGLLDGKTKTLEEVGQFFNVTRERIRQIEVKALRKLRHPSRSKQLKALLGMLNSSKS A0A1L7BKC7/286-370 KEAMRMLIREEVEKVLETLNDREKLVLKMRYGLIDGKSKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSRYLKLLFKMSDES-- A6LLT9/286-370 KEAMRMLIREEVEKVLETLNDREKLVLKMRYGLIDGKSKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSRYLKLLFKMSDES-- A8F8P3/315-400 KEAMRMLMREELEKVLKTLNPREAMVLKMRYGLLDGKAKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLISLLDQQ-G A0A101EVW2/315-401 KEAMRMLIREELEKVLKTLNPREAMVLKMRYGLLDGKAKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLITLLDDQEK A0A117MBU5/319-405 ESAMKMLLREQIDQVLDTLSPREAMVLKMRYGLLDGKTKTLEEVGQFFNVTRERIRQIEVKALRKLRHPSRSKQLKALLGMLNNAKK H2J544/335-418 -VAMKMLLREELEKILDTLQPREAMVLKMRYGLLDGKVKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSAQLKELSSMLGKE-- A0A1L7BSC2/335-418 -VAMKMLLREELEKILDTLQPREAMVLKMRYGLLDGKVKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSAQLKELSSMLGKE-- A0A0H2SDA4/336-419 -VAMKMLLREELEKILDTLQPREAMVLKMRYGLLDGKVKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSAQLKELSSMLGKE-- A0A0H2SFQ0/336-419 -VAMKMLLREELEKILDTLQPREAMVLKMRYGLLDGKVKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSAQLKELSSMLGKE-- A0A101HPQ8/330-416 EAAMKMLLREQIDQILDTLSPREAMVLKMRYGLLDGKTKTLEEVGQFFNVTRERIRQIEVKALRKLRHPSRSKQLKALLGMLNTSKR A0A1E3G1A0/288-372 KEAIRMLMKEEIDKLLETLNDREKMVLKMRYGILDGKPKTLEEVGQYFGVTRERIRQIEVKALRKLRHPSRSRYLRLLQKLTEED-- A0A1L7BFN1/286-370 KEAMRMLIREEVEKVLETLNDREKLVLKMRYGLIDGKSKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSRYLKLLFKMSDES-- A0A1L2EK61/286-370 KEAMRMLIREEVEKVLETLNDREKLVLKMRYGLIDGKSKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSRYLKLLFKMSDES-- #=GC scorecons 449778968965766959955996799899998799949999999979799999999999999999999999559838347554411 #=GC scorecons_70 __*****_***_****_**__**_*************_**********************************__**_*__*______ #=GC scorecons_80 __**_**_**__*__*_**__**_*********_***_**********************************__**_*_________ #=GC scorecons_90 __*__**_**_____*_**__**__*******__***_********_*_***********************__**_*_________ //