# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/159563
#=GF DE RNA polymerase sigma factor
#=GF AC 1.10.10.10/FF/159563
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 43.227
#=GS P52323/545-629      AC P52323
#=GS P52323/545-629      OS Borrelia burgdorferi B31
#=GS P52323/545-629      DE RNA polymerase sigma factor RpoD
#=GS P52323/545-629      DR GENE3D; 30f86f73cdbed0b903b4402d5c78d82e/545-629; 
#=GS P52323/545-629      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella; Borreliella burgdorferi; 
#=GS A0A1G3YKC1/504-588  AC A0A1G3YKC1
#=GS A0A1G3YKC1/504-588  OS Treponema sp. GWC1_61_84
#=GS A0A1G3YKC1/504-588  DE RNA polymerase sigma factor RpoD
#=GS A0A1G3YKC1/504-588  DR GENE3D; 02080b4c4a6add6ae27f051233f7a66f/504-588; 
#=GS A0A1G3YKC1/504-588  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema sp. GWC1_61_84; 
#=GS A0A098R2B9/524-608  AC A0A098R2B9
#=GS A0A098R2B9/524-608  OS Spirochaeta lutea
#=GS A0A098R2B9/524-608  DE RNA polymerase sigma factor RpoD
#=GS A0A098R2B9/524-608  DR GENE3D; 1153bd2d948a8e66eea83186d0609cbc/524-608; 
#=GS A0A098R2B9/524-608  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Spirochaeta; Spirochaeta lutea; 
#=GS G0GDN5/484-568      AC G0GDN5
#=GS G0GDN5/484-568      OS Spirochaeta thermophila DSM 6578
#=GS G0GDN5/484-568      DE RNA polymerase sigma factor RpoD
#=GS G0GDN5/484-568      DR GENE3D; 39f9f1380580066d7d8fdb6dbd895489/484-568; 
#=GS G0GDN5/484-568      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Spirochaeta; Spirochaeta thermophila; 
#=GS W6U0R9/235-319      AC W6U0R9
#=GS W6U0R9/235-319      OS Borrelia duttonii CR2A
#=GS W6U0R9/235-319      DE RNA polymerase sigma factor RpoD
#=GS W6U0R9/235-319      DR GENE3D; 4d07c736879a466f8b145ee5fdd7d608/235-319; 
#=GS W6U0R9/235-319      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia; Borrelia duttonii; 
#=GS E0RSP0/496-580      AC E0RSP0
#=GS E0RSP0/496-580      OS Spirochaeta thermophila DSM 6192
#=GS E0RSP0/496-580      DE RNA polymerase sigma factor RpoD
#=GS E0RSP0/496-580      DR GENE3D; 5499cb4c1ad73295d8d146d7677cd7fc/496-580; 
#=GS E0RSP0/496-580      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Spirochaeta; Spirochaeta thermophila; 
#=GS A0A172XC86/544-628  AC A0A172XC86
#=GS A0A172XC86/544-628  OS Borrelia turicatae
#=GS A0A172XC86/544-628  DE RNA polymerase sigma factor RpoD
#=GS A0A172XC86/544-628  DR GENE3D; a7fc4ee18fe3041c4930b768f748c902/544-628; 
#=GS A0A172XC86/544-628  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia; Borrelia turicatae; 
#=GS A1R0D6/544-628      AC A1R0D6
#=GS A1R0D6/544-628      OS Borrelia turicatae 91E135
#=GS A1R0D6/544-628      DE RNA polymerase sigma factor RpoD
#=GS A1R0D6/544-628      DR GENE3D; a7fc4ee18fe3041c4930b768f748c902/544-628; 
#=GS A1R0D6/544-628      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Borreliaceae; Borrelia; Borrelia turicatae; 
#=GS F8F3G2/494-578      AC F8F3G2
#=GS F8F3G2/494-578      OS Treponema caldarium DSM 7334
#=GS F8F3G2/494-578      DE RNA polymerase sigma factor RpoD
#=GS F8F3G2/494-578      DR GENE3D; ccd0b3a1826e7716f9c37c5d32e4b627/494-578; 
#=GS F8F3G2/494-578      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema caldarium; 
#=GS P78002/388-450      AC P78002
#=GS P78002/388-450      OS Borreliella afzelii
#=GS P78002/388-450      DE Primary sigma factor
#=GS P78002/388-450      DR GENE3D; 76256e8f876ac24f550f5a812e18900a/388-450; 
#=GS P78002/388-450      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella; Borreliella afzelii; 
#=GS P77824/388-450      AC P77824
#=GS P77824/388-450      OS Borreliella garinii
#=GS P77824/388-450      DE Primary sigma factor
#=GS P77824/388-450      DR GENE3D; 76256e8f876ac24f550f5a812e18900a/388-450; 
#=GS P77824/388-450      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Borreliaceae; Borreliella; Borreliella garinii; 
#=GF TC 137.4 5.9E-44
#=GF SQ 11
P52323/545-629              KNPANHTSFVVLQDQIRAILGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKALRRLKNPKKTQKLKDYLED
A0A1G3YKC1/504-588          ENPANQTAFKLLQEQLRTVLATLPPREQEVLKMRFGLDDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPKRSRKLKDYLDH
A0A098R2B9/524-608          ENPAHQTAFTLLQEQLREVLGTLPEREQEVLKMRFGLEDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPKRSRRLKDYLDN
G0GDN5/484-568              VNPSHQTAYALLQQQIKDVLATLPPREQEVLKMRFGLEDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPKRSRRLKDYLEE
W6U0R9/235-319              KNPAKHTSFVVLQDQIRAVLGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKALRRLKNPKKTQKLKDYLED
E0RSP0/496-580              INPSHQTAYALLQQQIKDVLATLPPREQEVLKMRFGLEDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPKRSRRLKDYLEE
A0A172XC86/544-628          KNPAKHTSFVVLQDQIRAVLGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKALRRLKNPKKTQKLKDYLED
A1R0D6/544-628              KNPAKHTSFVVLQDQIRAVLGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKALRRLKNPKKTQKLKDYLED
F8F3G2/494-578              ENPANQTAFTLLQEQLRTVLQTLPPREQEVLKMRFGLDDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPKRSRKLKDYLDH
P78002/388-450              -------SFVVLQDQIRAILGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKALRRL---------------
P77824/388-450              -------SFVVLQDQIRAILGTLPEREQEVVKMRFGLEDGYSLTLEEVGLHFNVTRERIRQIESKALRRL---------------
#=GC scorecons              1443234684699697757959995999996999999799999999999979999999999996999999324432334444432
#=GC scorecons_70           ________*_***_***_**_***_**************************************_******_______________
#=GC scorecons_80           ________*__**_*_*__*_***_*****_*******************_************_******_______________
#=GC scorecons_90           ___________**_*____*_***_*****_******_************_************_******_______________
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