# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/154378
#=GF DE Transcriptional activator protein RaiR
#=GF AC 1.10.10.10/FF/154378
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 44.865
#=GS B3Q3I2/176-241      AC B3Q3I2
#=GS B3Q3I2/176-241      OS Rhizobium etli CIAT 652
#=GS B3Q3I2/176-241      DE Transcriptional activator protein
#=GS B3Q3I2/176-241      DR GENE3D; 05a00c2fd4b175aa9c209bfa9bfa2bb8/176-241; 
#=GS B3Q3I2/176-241      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium; Rhizobium etli; 
#=GS F2A5Y8/176-241      AC F2A5Y8
#=GS F2A5Y8/176-241      OS Rhizobium etli CNPAF512
#=GS F2A5Y8/176-241      DE Transcriptional activator protein
#=GS F2A5Y8/176-241      DR GENE3D; 05a00c2fd4b175aa9c209bfa9bfa2bb8/176-241; 
#=GS F2A5Y8/176-241      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium; Rhizobium etli; 
#=GS A0A072BTG7/176-241  AC A0A072BTG7
#=GS A0A072BTG7/176-241  OS Rhizobium leguminosarum bv. phaseoli CCGM1
#=GS A0A072BTG7/176-241  DE Transcriptional activator protein
#=GS A0A072BTG7/176-241  DR GENE3D; 05a00c2fd4b175aa9c209bfa9bfa2bb8/176-241; 
#=GS A0A072BTG7/176-241  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium; Rhizobium leguminosarum; 
#=GS A0A192TNF9/176-241  AC A0A192TNF9
#=GS A0A192TNF9/176-241  OS Rhizobium phaseoli
#=GS A0A192TNF9/176-241  DE Transcriptional activator protein 2
#=GS A0A192TNF9/176-241  DR GENE3D; 05a00c2fd4b175aa9c209bfa9bfa2bb8/176-241; 
#=GS A0A192TNF9/176-241  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium; Rhizobium phaseoli; 
#=GS K0VJ52/133-199      AC K0VJ52
#=GS K0VJ52/133-199      OS Rhizobium sp. Pop5
#=GS K0VJ52/133-199      DE Transcriptional activator protein
#=GS K0VJ52/133-199      DR GENE3D; 1910daf4a8b394659657902eebc56f65/133-199; 
#=GS K0VJ52/133-199      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium; Rhizobium sp. Pop5; 
#=GS A0A192WMI3/179-240  AC A0A192WMI3
#=GS A0A192WMI3/179-240  OS Rhizobium sp. N941
#=GS A0A192WMI3/179-240  DE Transcriptional activator protein 2
#=GS A0A192WMI3/179-240  DR GENE3D; a619a4ee95685eac270d059d1f2a026b/179-240; 
#=GS A0A192WMI3/179-240  DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium; Rhizobium sp. N941; 
#=GS O54452/176-236      AC O54452
#=GS O54452/176-236      OS Rhizobium etli
#=GS O54452/176-236      DE Transcriptional activator protein RaiR
#=GS O54452/176-236      DR GENE3D; affec66e6f038509ee38d96a874ba351/176-236; 
#=GS O54452/176-236      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium; Rhizobium etli; 
#=GS Q8VM81/200-265      AC Q8VM81
#=GS Q8VM81/200-265      OS Rhizobium leguminosarum
#=GS Q8VM81/200-265      DE RaiR protein
#=GS Q8VM81/200-265      DR GENE3D; bef8d73f1b5160b41f787c4c8e58a915/200-265; 
#=GS Q8VM81/200-265      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium; Rhizobium leguminosarum; 
#=GS Q2JYK7/179-241      AC Q2JYK7
#=GS Q2JYK7/179-241      OS Rhizobium etli CFN 42
#=GS Q2JYK7/179-241      DE Transcriptional regulator (Activator) protein, LuxR family
#=GS Q2JYK7/179-241      DR GENE3D; d1724a4d69a9a95c2a0ca507b0768a6f/179-241; 
#=GS Q2JYK7/179-241      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium; Rhizobium etli; 
#=GS J0KT52/178-240      AC J0KT52
#=GS J0KT52/178-240      OS Rhizobium leguminosarum bv. trifolii WSM2297
#=GS J0KT52/178-240      DE Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
#=GS J0KT52/178-240      DR GENE3D; deed5508190057e453a0a5675e7024ff/178-240; 
#=GS J0KT52/178-240      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium; Rhizobium leguminosarum; 
#=GS I9XDN9/176-240      AC I9XDN9
#=GS I9XDN9/176-240      OS Rhizobium leguminosarum bv. trifolii WSM597
#=GS I9XDN9/176-240      DE Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
#=GS I9XDN9/176-240      DR GENE3D; f92690bea921ba2bcede9514e2128297/176-240; 
#=GS I9XDN9/176-240      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium; Rhizobium leguminosarum; 
#=GF TC 131.6 3.2E-42
#=GF SQ 11
B3Q3I2/176-241              ---ADLPRLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALELI
F2A5Y8/176-241              ---ADLPRLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALELI
A0A072BTG7/176-241          ---ADLPRLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALELI
A0A192TNF9/176-241          ---ADLPRLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALELI
K0VJ52/133-199              --AADFPQLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTTEAVARATALELI
A0A192WMI3/179-240          -------QLSRRELQCLQMTANGLLAKQICARLCISVSAVQLYLASARRKLTVATTSEAVAKATALELI
O54452/176-236              RKVADLPRLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEQL--------L
Q8VM81/200-265              ---TDFPQLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVAKATALELI
Q2JYK7/179-241              ------AHLSRRELQCLEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKATALELI
J0KT52/178-240              ------ANLSGRELQCLEMTASGLMAKQICARLSISVSAVQLYLASARRKLTVATTSEAVAKATALELI
I9XDN9/176-240              ----DFPPLSRRELQCLQMTANGFMAKQICARLGISTSAVQLYLASARRKLIVATTSEAVAKATTLELI
#=GC scorecons              000242549979999997999697799997999699799999999999999799998967545545557
#=GC scorecons_70           ________*************************_**************************________*
#=GC scorecons_80           ________*************_*_*********_**_*********************_*________*
#=GC scorecons_90           ________**_******_***_*__****_***_**_**************_******___________
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