# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/153519
#=GF DE RNA polymerase sigma factor RpoD
#=GF AC 1.10.10.10/FF/153519
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 13.326
#=GS O83506/526-611      AC O83506
#=GS O83506/526-611      OS Treponema pallidum subsp. pallidum str. Nichols
#=GS O83506/526-611      DE RNA polymerase sigma factor RpoD
#=GS O83506/526-611      DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/526-611; 
#=GS O83506/526-611      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; 
#=GS R9UT89/526-611      AC R9UT89
#=GS R9UT89/526-611      OS Treponema pallidum subsp. pallidum str. Nichols
#=GS R9UT89/526-611      DE RNA polymerase sigma factor RpoD
#=GS R9UT89/526-611      DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/526-611; 
#=GS R9UT89/526-611      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; 
#=GS A0A1L7DEN9/526-611  AC A0A1L7DEN9
#=GS A0A1L7DEN9/526-611  OS Treponema pallidum subsp. pallidum
#=GS A0A1L7DEN9/526-611  DE RNA polymerase sigma factor RpoD
#=GS A0A1L7DEN9/526-611  DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/526-611; 
#=GS A0A1L7DEN9/526-611  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; 
#=GS A0A0A7X4T0/526-611  AC A0A0A7X4T0
#=GS A0A0A7X4T0/526-611  OS Treponema pallidum subsp. endemicum str. Bosnia A
#=GS A0A0A7X4T0/526-611  DE RNA polymerase sigma factor RpoD
#=GS A0A0A7X4T0/526-611  DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/526-611; 
#=GS A0A0A7X4T0/526-611  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. endemicum; 
#=GS H6KTV1/526-611      AC H6KTV1
#=GS H6KTV1/526-611      OS Treponema pallidum subsp. pertenue str. CDC2
#=GS H6KTV1/526-611      DE RNA polymerase sigma factor RpoD
#=GS H6KTV1/526-611      DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/526-611; 
#=GS H6KTV1/526-611      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pertenue; 
#=GS A0A0H3BJ10/526-611  AC A0A0H3BJ10
#=GS A0A0H3BJ10/526-611  OS Treponema pallidum subsp. pallidum SS14
#=GS A0A0H3BJ10/526-611  DE RNA polymerase sigma factor RpoD
#=GS A0A0H3BJ10/526-611  DR GENE3D; 4d3551b4a11974a4bcdf0318e63e44b0/526-611; 
#=GS A0A0H3BJ10/526-611  DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema pallidum; Treponema pallidum subsp. pallidum; 
#=GS E7NVF8/520-604      AC E7NVF8
#=GS E7NVF8/520-604      OS Treponema phagedenis F0421
#=GS E7NVF8/520-604      DE RNA polymerase sigma factor RpoD
#=GS E7NVF8/520-604      DR GENE3D; 57a345d9dbfc0ad2abd12587f5752dbf/520-604; 
#=GS E7NVF8/520-604      DR ORG; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Spirochaetaceae; Treponema; Treponema phagedenis; 
#=GF TC 191.5 1.9E-61
#=GF SQ 7
O83506/526-611              VENPSRVTERVLLKEEVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSRRLKDFLDS
R9UT89/526-611              VENPSRVTERVLLKEEVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSRRLKDFLDS
A0A1L7DEN9/526-611          VENPSRVTERVLLKEEVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSRRLKDFLDS
A0A0A7X4T0/526-611          VENPSRVTERVLLKEEVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSRRLKDFLDS
H6KTV1/526-611              VENPSRVTERVLLKEEVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSRRLKDFLDS
A0A0H3BJ10/526-611          VENPSRVTERVLLKEEVRSILSALPAREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPRHSRRLKDFLDS
E7NVF8/520-604              -ENPSNVTEKILLREEVQSVLSTLPSREHEVLKMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALRRLRHPRHSRRLKDFLDN
#=GC scorecons              29999499966996999596995995999999699999999999999999999999999999999999699999999999999995
#=GC scorecons_70           _****_***********_****_**_***********************************************************_
#=GC scorecons_80           _****_***__**_***_*_**_**_******_***********************************_****************_
#=GC scorecons_90           _****_***__**_***_*_**_**_******_***********************************_****************_
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