# STOCKHOLM 1.0
#=GF ID 1.10.10.10/FF/153236
#=GF DE RNA polymerase sigma factor
#=GF AC 1.10.10.10/FF/153236
#=GF TP FunFam
#=GF DR CATH: 4.2
#=GF DR DOPS: 13.539
#=GS P55993/587-670  AC P55993
#=GS P55993/587-670  OS Helicobacter pylori 26695
#=GS P55993/587-670  DE RNA polymerase sigma factor RpoD
#=GS P55993/587-670  DR GENE3D; 1d81b92f8c78a0cc25315f32836ce210/587-670; 
#=GS P55993/587-670  DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; 
#=GS P55993/587-670  DR GO; GO:0005515; 
#=GS I0ELD4/566-649  AC I0ELD4
#=GS I0ELD4/566-649  OS Helicobacter cetorum MIT 00-7128
#=GS I0ELD4/566-649  DE RNA polymerase sigma factor RpoD
#=GS I0ELD4/566-649  DR GENE3D; c41b34ed7f8ebe09cc6041ae3c931e3b/566-649; 
#=GS I0ELD4/566-649  DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter cetorum; 
#=GS H5VC66/75-158   AC H5VC66
#=GS H5VC66/75-158   OS Helicobacter bizzozeronii CCUG 35545
#=GS H5VC66/75-158   DE RNA polymerase sigma factor RpoD
#=GS H5VC66/75-158   DR GENE3D; f94cffea984f77af71cd8f4fd6246a1a/75-158; 
#=GS H5VC66/75-158   DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter bizzozeronii; 
#=GS E7A947/537-620  AC E7A947
#=GS E7A947/537-620  OS Helicobacter felis ATCC 49179
#=GS E7A947/537-620  DE RNA polymerase sigma factor RpoD
#=GS E7A947/537-620  DR GENE3D; e154e8ef9c3ad36b77eb1f4078925d65/537-620; 
#=GS E7A947/537-620  DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter felis; 
#=GS E7G2Z2/550-633  AC E7G2Z2
#=GS E7G2Z2/550-633  OS Helicobacter suis HS5
#=GS E7G2Z2/550-633  DE RNA polymerase sigma factor RpoD
#=GS E7G2Z2/550-633  DR GENE3D; 439fb72c9d1228c12a3adbdd1ee99bf5/550-633; 
#=GS E7G2Z2/550-633  DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter suis; 
#=GS F8KT71/540-623  AC F8KT71
#=GS F8KT71/540-623  OS Helicobacter bizzozeronii CIII-1
#=GS F8KT71/540-623  DE RNA polymerase sigma factor RpoD
#=GS F8KT71/540-623  DR GENE3D; d510f6ff6ba3c2772e5e36b048a61b2c/540-623; 
#=GS F8KT71/540-623  DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter bizzozeronii; 
#=GF TC 185.0 6.4E-59
#=GF SQ 6
P55993/587-670          SSIDHIMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYLR
I0ELD4/566-649          SSMDHIMREDLKAQIDGVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRILRNYLR
H5VC66/75-158           GSMEHIMREDLKAQIDGVLDQLNEREKSVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRLLRSYLR
E7A947/537-620          GSMDHIMREDLKTQIDGVLDQLNEREKSVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRLLRSYLR
E7G2Z2/550-633          GSMEHIMREDLKAQIDGVLDQLNEREKSVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRLLRSYLR
F8KT71/540-623          GSMEHIMREDLKAQIDGVLDQLNEREKSVIRMRFGLLEDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRLLRSYLR
#=GC scorecons          596699999999799769999999999599999999969999999999999999999999999999999999999996995999
#=GC scorecons_70       _**************************_*************************************************_**_***
#=GC scorecons_80       _*__************_**********_*********_***************************************_**_***
#=GC scorecons_90       _*__********_**__**********_*********_***************************************_**_***
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