CATH Classification

Domain Context

CATH Clusters

Superfamily 2.60.120.200
Functional Family

Enzyme Information

3.2.1.178
Beta-porphyranase.
based on mapping to UniProt B5CY92
Hydrolysis of beta-D-galactopyranose-(1->4)-alpha-L-galactopyranose-6- sulfate linkages in porphyran.
-!- The backbone of porphyran consists largely (approximately 70%) of (1->3)-linked beta-D-galactopyranose followed by (1->4)-linked alpha- L-galactopyranose-6-sulfate (the other 30% are mostly agarobiose repeating units of (1->3)-linked beta-D-galactopyranose followed by (1->4)-linked 3,6-anhydro-alpha-L-galactopyranose). -!- This enzyme cleaves the (1->4) linkages between beta-D- galactopyranose and alpha-L-galactopyranose-6-sulfate, forming mostly the disaccharide alpha-L-galactopyranose-6-sulfate-(1->3)-beta-D- galactose, although some longer oligosaccharides of even number of residues are also observed. -!- Since the enzyme is inactive on the non-sulfated agarose portion of the porphyran backbone, some agarose fragments are also included in the products. -!- Methylation of the D-galactose prevents its binding at position -1.

UniProtKB Entries (1)

B5CY92
PORB_BACPM
Bacteroides plebeius DSM 17135
Beta-porphyranase B

PDB Structure

PDB 4AWD
External Links
Method X-RAY DIFFRACTION
Organism
Primary Citation
Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes.
Hehemann, J.H., Kelly, A.G., Pudlo, N.A., Martens, E.C., Boraston, A.B.
Proc. Natl. Acad. Sci. U.S.A.