PDB 5xyi

PDB Information

PDB5XYI
MethodELECTRON MICROSCOPY
Host Organism
Gene Source
Primary Citation
Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii
Li, Z., Guo, Q., Zheng, L., Ji, Y., Xie, Y.T., Lai, D.H., Lun, Z.R., Suo, X., Gao, N.
Cell Res.
HeaderRibosome
Released2017-07-08
Resolution3.350
CATH Insert Date14 Nov, 2017

PDB Images (72)

PDB Prints

PDB Chains (34)

Chain ID Date inserted into CATH CATH Status
2 14 Nov, 2017 Rejected
a 14 Nov, 2017 Chopped
A 14 Nov, 2017 Chopped
b 14 Nov, 2017 Chopped
B 14 Nov, 2017 Chopped
c 14 Nov, 2017 Chopped
C 14 Nov, 2017 Chopped
d 14 Nov, 2017 Chopped
D 14 Nov, 2017 Chopped
e 14 Nov, 2017 Holding pen
E 14 Nov, 2017 Chopped
F 14 Nov, 2017 Chopped
g 14 Nov, 2017 Chopped
G 14 Nov, 2017 Rejected
H 14 Nov, 2017 Chopped
I 14 Nov, 2017 Chopped
J 14 Nov, 2017 Chopped
K 14 Nov, 2017 Chopped
L 14 Nov, 2017 Chopped
M 14 Nov, 2017 Chopped
n 14 Nov, 2017 Rejected
N 14 Nov, 2017 Chopped
O 14 Nov, 2017 Chopped
P 14 Nov, 2017 Chopped
Q 14 Nov, 2017 Chopped
R 14 Nov, 2017 Chopped
S 14 Nov, 2017 Chopped
T 14 Nov, 2017 Chopped
U 14 Nov, 2017 Chopped
V 14 Nov, 2017 Chopped
W 14 Nov, 2017 Chopped
X 14 Nov, 2017 Chopped
Y 14 Nov, 2017 Chopped
Z 14 Nov, 2017 Chopped

CATH Domains (37)

Domain ID Date inserted into CATH Superfamily CATH Status
5xyia00 10 Dec, 2017 3.30.1740.20 Assigned
5xyiA01 10 Dec, 2017 3.40.50.10490 Assigned
5xyib00 10 Dec, 2017 2.20.25.100 Assigned
5xyiB00 16 Dec, 2017 Write scan list
5xyic00 10 Dec, 2017 2.40.50.140 Assigned
5xyiC01 10 Dec, 2017 3.30.160.20 Assigned
5xyiC02 10 Dec, 2017 3.30.230.10 Assigned
5xyid00 10 Dec, 2017 4.10.830.10 Assigned
5xyiD01 10 Dec, 2017 3.30.300.20 Assigned
5xyiD02 10 Dec, 2017 3.30.1140.32 Assigned
5xyiE01 10 Dec, 2017 3.10.290.10 Assigned
5xyiE02 10 Dec, 2017 2.40.50.740 Assigned
5xyiE03 10 Dec, 2017 2.30.30.30 Assigned
5xyiF00 10 Dec, 2017 1.10.455.10 Assigned
5xyig01 10 Dec, 2017 2.130.10.10 Assigned
5xyiH00 16 Dec, 2017 Holding pen
5xyiI01 10 Dec, 2017 Holding pen
5xyiJ01 10 Dec, 2017 Holding pen
5xyiK00 10 Dec, 2017 1.10.10.10 Assigned
5xyiL00 10 Dec, 2017 2.40.50.1000 Assigned
5xyiM00 10 Dec, 2017 Write scan list
5xyiN01 10 Dec, 2017 Holding pen
5xyiN02 10 Dec, 2017 1.10.287.10 Assigned
5xyiO00 10 Dec, 2017 3.30.420.80 Assigned
5xyiP00 10 Dec, 2017 Write scan list
5xyiQ00 10 Dec, 2017 3.30.230.10 Assigned
5xyiR01 10 Dec, 2017 1.10.60.20 Assigned
5xyiS01 10 Dec, 2017 1.10.8.50 Assigned
5xyiS02 10 Dec, 2017 Holding pen
5xyiT00 16 Dec, 2017 Write scan list
5xyiU00 10 Dec, 2017 3.30.70.600 Assigned
5xyiV00 10 Dec, 2017 3.30.1230.20 Assigned
5xyiW01 10 Dec, 2017 3.30.1370.30 Assigned
5xyiW02 10 Dec, 2017 3.30.1490.10 Assigned
5xyiX00 10 Dec, 2017 Holding pen
5xyiY00 10 Dec, 2017 3.30.70.3370 Assigned
5xyiZ00 16 Dec, 2017 Write scan list

UniProtKB Entries (29)

Accession Gene ID Taxon Description
A2DHU8 A2DHU8_TRIVA Trichomonas vaginalis Uncharacterized protein
A2DTR8 A2DTR8_TRIVA Trichomonas vaginalis Ribosomal protein S13p/S18e, putative
A2DPS3 A2DPS3_TRIVA Trichomonas vaginalis 40S ribosomal protein S17-B, putative
A2D919 A2D919_TRIVA Trichomonas vaginalis 40S ribosomal protein S16, putative
A2EFE7 A2EFE7_TRIVA Trichomonas vaginalis 40S ribosomal protein SA
A2F0H5 A2F0H5_TRIVA Trichomonas vaginalis Ribosomal protein S24e, putative
A2D895 A2D895_TRIVA Trichomonas vaginalis 40S ribosomal protein S23, putative
A2ER97 A2ER97_TRIVA Trichomonas vaginalis Uncharacterized protein
A2FA40 A2FA40_TRIVA Trichomonas vaginalis Ribosomal protein L7Ae, putative
A2DQN8 A2DQN8_TRIVA Trichomonas vaginalis Uncharacterized protein
A2FFS8 A2FFS8_TRIVA Trichomonas vaginalis 40S ribosomal protein S21
A2DVD8 A2DVD8_TRIVA Trichomonas vaginalis Ribosomal protein S19, putative
A2EBA2 A2EBA2_TRIVA Trichomonas vaginalis Plectin/S10 domain containing protein
A2E1L5 A2E1L5_TRIVA Trichomonas vaginalis 40S ribosomal protein S8
A2EG54 A2EG54_TRIVA Trichomonas vaginalis Ribosomal protein S19e, putative
A2DLW4 A2DLW4_TRIVA Trichomonas vaginalis Ribosomal protein S15a
A2D9L2 A2D9L2_TRIVA Trichomonas vaginalis 40S ribosomal protein S13, putative
A2FDE0 A2FDE0_TRIVA Trichomonas vaginalis Ribosomal protein S10p/S20e, putative
A2FC75 A2FC75_TRIVA Trichomonas vaginalis 40S ribosomal protein S4
A2ELV7 A2ELV7_TRIVA Trichomonas vaginalis Guanine nucleotide-binding protein beta subunit, putative
A2E4S6 A2E4S6_TRIVA Trichomonas vaginalis 40s ribosomal protein S5-B, putative
A2DIM3 A2DIM3_TRIVA Trichomonas vaginalis Ribosomal protein S3, putative
A2EHK3 A2EHK3_TRIVA Trichomonas vaginalis Uncharacterized protein
Q76KS8 Q76KS8_TRIVA Trichomonas vaginalis Ribosomal protein S14
A2DEJ9 A2DEJ9_TRIVA Trichomonas vaginalis 40S ribosomal protein S6
A2FBZ2 A2FBZ2_TRIVA Trichomonas vaginalis 40S ribosomal protein S27
A2DYA8 A2DYA8_TRIVA Trichomonas vaginalis 40S ribosomal protein S29, putative
A2DST7 A2DST7_TRIVA Trichomonas vaginalis 40S ribosomal protein S26
A2DNY3 A2DNY3_TRIVA Trichomonas vaginalis Uncharacterized protein