PDB 5x1f

PDB Links
Overview

PDB Information

PDB	5X1F
Method	X-RAY DIFFRACTION
Host Organism
Gene Source
Primary Citation	A nanosecond time-resolved XFEL analysis of structural changes associated with CO release from cytochrome c oxidase. Shimada, A., Kubo, M., Baba, S., Yamashita, K., Hirata, K., Ueno, G., Nomura, T., Kimura, T., Shinzawa-Itoh, K., Baba, J., Hatano, K., Eto, Y., Miyamoto, A., Murakami, H., Kumasaka, T., Owada, S., Tono, K., Yabashi, M., Yamaguchi, Y., Yanagisawa, S., Sakaguchi, M., Ogura, T., Komiya, R., Yan, J., Yamashita, E., Yamamoto, M., Ago, H., Yoshikawa, S., Tsukihara, T. Sci Adv
Header	Oxidoreductase
Released	2017-01-25
Resolution	2.200
CATH Insert Date	14 Nov, 2017

PDB Images (57)

5x1f

PDB 5x1f

5x1fA

PDB Chain 5x1fA

5x1fB

PDB Chain 5x1fB

5x1fC

PDB Chain 5x1fC

5x1fD

PDB Chain 5x1fD

5x1fE

PDB Chain 5x1fE

5x1fF

PDB Chain 5x1fF

5x1fG

PDB Chain 5x1fG

5x1fH

PDB Chain 5x1fH

5x1fI

PDB Chain 5x1fI

5x1fJ

PDB Chain 5x1fJ

5x1fK

PDB Chain 5x1fK

5x1fL

PDB Chain 5x1fL

5x1fM

PDB Chain 5x1fM

5x1fN

PDB Chain 5x1fN

5x1fO

PDB Chain 5x1fO

5x1fP

PDB Chain 5x1fP

5x1fQ

PDB Chain 5x1fQ

5x1fR

PDB Chain 5x1fR

5x1fS

PDB Chain 5x1fS

5x1fT

PDB Chain 5x1fT

5x1fU

PDB Chain 5x1fU

5x1fV

PDB Chain 5x1fV

5x1fW

PDB Chain 5x1fW

5x1fX

PDB Chain 5x1fX

5x1fY

PDB Chain 5x1fY

5x1fZ

PDB Chain 5x1fZ

5x1fA00

CATH Domain 5x1fA00

5x1fB01

CATH Domain 5x1fB01

5x1fB02

CATH Domain 5x1fB02

5x1fC01

CATH Domain 5x1fC01

5x1fC02

CATH Domain 5x1fC02

5x1fD00

CATH Domain 5x1fD00

5x1fE00

CATH Domain 5x1fE00

5x1fF00

CATH Domain 5x1fF00

5x1fG00

CATH Domain 5x1fG00

5x1fH00

CATH Domain 5x1fH00

5x1fI00

CATH Domain 5x1fI00

5x1fJ00

CATH Domain 5x1fJ00

5x1fK00

CATH Domain 5x1fK00

5x1fL00

CATH Domain 5x1fL00

5x1fM00

CATH Domain 5x1fM00

5x1fN00

CATH Domain 5x1fN00

5x1fO01

CATH Domain 5x1fO01

5x1fO02

CATH Domain 5x1fO02

5x1fP01

CATH Domain 5x1fP01

5x1fP02

CATH Domain 5x1fP02

5x1fQ00

CATH Domain 5x1fQ00

5x1fR00

CATH Domain 5x1fR00

5x1fS00

CATH Domain 5x1fS00

5x1fT00

CATH Domain 5x1fT00

5x1fU00

CATH Domain 5x1fU00

5x1fV00

CATH Domain 5x1fV00

5x1fW00

CATH Domain 5x1fW00

5x1fX00

CATH Domain 5x1fX00

5x1fY00

CATH Domain 5x1fY00

5x1fZ00

CATH Domain 5x1fZ00

PDB Prints

PDB Chains (26)

Chain ID	Date inserted into CATH	CATH Status
A	14 Nov, 2017	Chopped
B	14 Nov, 2017	Chopped
C	14 Nov, 2017	Chopped
D	14 Nov, 2017	Chopped
E	14 Nov, 2017	Chopped
F	14 Nov, 2017	Chopped
G	14 Nov, 2017	Chopped
H	14 Nov, 2017	Chopped
I	14 Nov, 2017	Chopped
J	14 Nov, 2017	Chopped
K	14 Nov, 2017	Chopped
L	14 Nov, 2017	Chopped
M	14 Nov, 2017	Chopped
N	14 Nov, 2017	Chopped
O	14 Nov, 2017	Chopped
P	14 Nov, 2017	Chopped
Q	14 Nov, 2017	Chopped
R	14 Nov, 2017	Chopped
S	14 Nov, 2017	Chopped
T	14 Nov, 2017	Chopped
U	14 Nov, 2017	Chopped
V	14 Nov, 2017	Chopped
W	14 Nov, 2017	Chopped
X	14 Nov, 2017	Chopped
Y	14 Nov, 2017	Chopped
Z	14 Nov, 2017	Chopped

CATH Domains (30)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
5x1fA00	10 Dec, 2017	1.20.210.10	Assigned
5x1fB01	10 Dec, 2017	1.10.287.90	Assigned
5x1fB02	10 Dec, 2017	2.60.40.420	Assigned
5x1fC01	10 Dec, 2017	1.10.287.70	Assigned
5x1fC02	10 Dec, 2017	1.20.120.80	Assigned
5x1fD00	10 Dec, 2017	1.10.442.10	Assigned
5x1fE00	10 Dec, 2017	1.25.40.40	Assigned
5x1fF00	10 Dec, 2017	2.60.11.10	Assigned
5x1fG00	10 Dec, 2017	4.10.95.10	Assigned
5x1fH00	10 Dec, 2017	1.10.10.140	Assigned
5x1fI00	10 Dec, 2017	4.10.93.10	Assigned
5x1fJ00	10 Dec, 2017	4.10.91.10	Assigned
5x1fK00	10 Dec, 2017	4.10.51.10	Assigned
5x1fL00	10 Dec, 2017	4.10.49.10	Assigned
5x1fM00	10 Dec, 2017	4.10.81.10	Assigned
5x1fN00	10 Dec, 2017	1.20.210.10	Assigned
5x1fO01	10 Dec, 2017	1.10.287.90	Assigned
5x1fO02	10 Dec, 2017	2.60.40.420	Assigned
5x1fP01	10 Dec, 2017	1.10.287.70	Assigned
5x1fP02	10 Dec, 2017	1.20.120.80	Assigned
5x1fQ00	10 Dec, 2017	1.10.442.10	Assigned
5x1fR00	10 Dec, 2017	1.25.40.40	Assigned
5x1fS00	10 Dec, 2017	2.60.11.10	Assigned
5x1fT00	10 Dec, 2017	4.10.95.10	Assigned
5x1fU00	10 Dec, 2017	1.10.10.140	Assigned
5x1fV00	10 Dec, 2017	4.10.93.10	Assigned
5x1fW00	10 Dec, 2017	4.10.91.10	Assigned
5x1fX00	10 Dec, 2017	4.10.51.10	Assigned
5x1fY00	10 Dec, 2017	4.10.49.10	Assigned
5x1fZ00	10 Dec, 2017	4.10.81.10	Assigned

UniProtKB Entries (26)

Accession	Gene ID	Taxon	Description
P00426	COX5A_BOVIN	Bos taurus	Cytochrome c oxidase subunit 5A, mitochondrial
P07471	CX6A2_BOVIN	Bos taurus	Cytochrome c oxidase subunit 6A2, mitochondrial
P00430	COX7C_BOVIN	Bos taurus	Cytochrome c oxidase subunit 7C, mitochondrial
P00423	COX41_BOVIN	Bos taurus	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial
P10175	COX8B_BOVIN	Bos taurus	Cytochrome c oxidase subunit 8B, mitochondrial
P68530	COX2_BOVIN	Bos taurus	Cytochrome c oxidase subunit 2
P04038	COX6C_BOVIN	Bos taurus	Cytochrome c oxidase subunit 6C
P13183	COX7B_BOVIN	Bos taurus	Cytochrome c oxidase subunit 7B, mitochondrial
P00396	COX1_BOVIN	Bos taurus	Cytochrome c oxidase subunit 1
P00396	COX1_BOVIN	Bos taurus	Cytochrome c oxidase subunit 1
P00430	COX7C_BOVIN	Bos taurus	Cytochrome c oxidase subunit 7C, mitochondrial
P10175	COX8B_BOVIN	Bos taurus	Cytochrome c oxidase subunit 8B, mitochondrial
P00426	COX5A_BOVIN	Bos taurus	Cytochrome c oxidase subunit 5A, mitochondrial
P00429	CX6B1_BOVIN	Bos taurus	Cytochrome c oxidase subunit 6B1
P07470	CX7A1_BOVIN	Bos taurus	Cytochrome c oxidase subunit 7A1, mitochondrial
P13183	COX7B_BOVIN	Bos taurus	Cytochrome c oxidase subunit 7B, mitochondrial
P07471	CX6A2_BOVIN	Bos taurus	Cytochrome c oxidase subunit 6A2, mitochondrial
P00429	CX6B1_BOVIN	Bos taurus	Cytochrome c oxidase subunit 6B1
P07470	CX7A1_BOVIN	Bos taurus	Cytochrome c oxidase subunit 7A1, mitochondrial
P00415	COX3_BOVIN	Bos taurus	Cytochrome c oxidase subunit 3
P00415	COX3_BOVIN	Bos taurus	Cytochrome c oxidase subunit 3
P68530	COX2_BOVIN	Bos taurus	Cytochrome c oxidase subunit 2
P04038	COX6C_BOVIN	Bos taurus	Cytochrome c oxidase subunit 6C
P00423	COX41_BOVIN	Bos taurus	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial
P00428	COX5B_BOVIN	Bos taurus	Cytochrome c oxidase subunit 5B, mitochondrial
P00428	COX5B_BOVIN	Bos taurus	Cytochrome c oxidase subunit 5B, mitochondrial