PDB Information

PDB5NRG
MethodX-RAY DIFFRACTION
Host Organism
Gene Source
Primary Citation
Structural insights of lincosamides targeting the ribosome of Staphylococcus aureus.
Matzov, D., Eyal, Z., Benhamou, R.I., Shalev-Benami, M., Halfon, Y., Krupkin, M., Zimmerman, E., Rozenberg, H., Bashan, A., Fridman, M., Yonath, A.
Nucleic Acids Res.
HeaderRibosome
Released2017-04-23
Resolution3.440
CATH Insert Date14 Nov, 2017

PDB Images (50)

PDB Prints

PDB Chains (26)

Chain ID Date inserted into CATH CATH Status
2 14 Nov, 2017 Chopped
3 14 Nov, 2017 Chopped
A 14 Nov, 2017 Chopped
B 14 Nov, 2017 Chopped
C 14 Nov, 2017 Chopped
D 14 Nov, 2017 Chopped
E 14 Nov, 2017 Domchop review
G 14 Nov, 2017 Chopped
H 14 Nov, 2017 Chopped
I 14 Nov, 2017 Holding pen
J 14 Nov, 2017 Chopped
K 14 Nov, 2017 Chopped
L 14 Nov, 2017 Chopped
M 14 Nov, 2017 Chopped
N 14 Nov, 2017 Chopped
O 14 Nov, 2017 Chopped
P 14 Nov, 2017 Chopped
Q 14 Nov, 2017 Chopped
R 14 Nov, 2017 Holding pen
S 14 Nov, 2017 Chopped
T 14 Nov, 2017 Holding pen
V 14 Nov, 2017 Chopped
W 14 Nov, 2017 Chopped
X 14 Nov, 2017 Rejected
Y 14 Nov, 2017 Rejected
Z 14 Nov, 2017 Chopped

CATH Domains (23)

Domain ID Date inserted into CATH Superfamily CATH Status
5nrg200 10 Dec, 2017 1.10.287.3980 Assigned
5nrg300 10 Dec, 2017 Holding pen
5nrgA01 12 Jul, 2018 Check for files
5nrgA02 12 Jul, 2018 Check for files
5nrgA03 12 Jul, 2018 Check for files
5nrgB00 10 Dec, 2017 Holding pen
5nrgC00 10 Dec, 2017 Holding pen
5nrgD00 21 Feb, 2018 Write scan list
5nrgG00 14 Dec, 2017 Holding pen
5nrgH00 10 Dec, 2017 2.40.150.20 Assigned
5nrgJ01 10 Dec, 2017 3.90.1170.10 Assigned
5nrgK00 10 Dec, 2017 3.90.1030.10 Assigned
5nrgL01 10 Dec, 2017 3.30.420.100 Assigned
5nrgM00 10 Dec, 2017 Holding pen
5nrgN00 10 Dec, 2017 Holding pen
5nrgO00 10 Dec, 2017 Holding pen
5nrgP00 10 Dec, 2017 3.90.470.10 Assigned
5nrgQ00 10 Dec, 2017 3.30.70.330 Assigned
5nrgS01 10 Dec, 2017 2.40.240.10 Assigned
5nrgS02 10 Dec, 2017 2.170.120.20 Assigned
5nrgV00 10 Dec, 2017 Holding pen
5nrgW00 10 Dec, 2017 3.30.1390.20 Assigned
5nrgZ01 10 Dec, 2017 Holding pen

UniProtKB Entries (22)

Accession Gene ID Taxon Description
Q2FXQ1 RL20_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L20
P0A0G2 RL30_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L30
Q2FUQ0 RL34_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L34
Q2FW08 RL23_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L23
Q2G0S0 Q2G0S0_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L25
Q2FW38 RL13_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L13
Q2FW18 RL5_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L5
Q2FW33 RL17_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L17
Q2FZ42 RL19_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L19
P60430 RL2_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L2
Q2FW22 RL18_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L18
Q2FXT0 RL27_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L27
Q2FW13 RL16_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L16
Q2FW06 RL3_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L3
Q2FW16 RL14_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L14
Q2FW07 RL4_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L4
P0A0F8 RL15_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L15
Q2FXQ0 RL35_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L35
Q2FW21 RL6_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L6
Q2FW11 RL22_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L22
Q2FW17 RL24_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L24
Q2FW14 RL29_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L29