PDB 5hkv

PDB Information

PDB5HKV
MethodX-RAY DIFFRACTION
Host Organism
Gene Source
Primary Citation
Structural insights of lincosamides targeting the ribosome of Staphylococcus aureus.
Matzov, D., Eyal, Z., Benhamou, R.I., Shalev-Benami, M., Halfon, Y., Krupkin, M., Zimmerman, E., Rozenberg, H., Bashan, A., Fridman, M., Yonath, A.
Nucleic Acids Res.
HeaderRibosome
Released2016-01-14
Resolution3.660
CATH Insert Date14 May, 2017

PDB Images (54)

PDB Prints

PDB Chains (27)

Chain ID Date inserted into CATH CATH Status
2 15 May, 2017 Chopped
3 15 May, 2017 Chopped
A 15 May, 2017 Chopped
B 15 May, 2017 Chopped
C 15 May, 2017 Chopped
D 15 May, 2017 Chopped
E 15 May, 2017 Chopped
G 15 May, 2017 Chopped
H 15 May, 2017 Chopped
I 15 May, 2017 Holding pen
J 15 May, 2017 Chopped
K 15 May, 2017 Chopped
L 15 May, 2017 Chopped
M 15 May, 2017 Chopped
N 15 May, 2017 Chopped
O 15 May, 2017 Chopped
P 15 May, 2017 Chopped
Q 15 May, 2017 Chopped
R 15 May, 2017 Holding pen
S 15 May, 2017 Chopped
T 15 May, 2017 Holding pen
U 15 May, 2017 Chopped
V 15 May, 2017 Chopped
W 15 May, 2017 Chopped
X 15 May, 2017 Rejected
Y 15 May, 2017 Rejected
Z 15 May, 2017 Chopped

CATH Domains (26)

Domain ID Date inserted into CATH Superfamily CATH Status
5hkv200 06 Nov, 2017 1.10.287.3980 Assigned
5hkv300 06 Nov, 2017 Holding pen
5hkvA01 12 Jul, 2018 2.40.50.140 Assigned
5hkvA02 12 Jul, 2018 Holding pen
5hkvA03 12 Jul, 2018 4.10.950.10 Assigned
5hkvB00 06 Nov, 2017 Holding pen
5hkvC00 06 Nov, 2017 Holding pen
5hkvD00 14 Dec, 2017 3.30.1440.10 Assigned
5hkvE01 06 Nov, 2017 3.90.930.12 Assigned
5hkvE02 06 Nov, 2017 3.90.930.12 Assigned
5hkvG00 14 Dec, 2017 Holding pen
5hkvH00 06 Nov, 2017 2.40.150.20 Assigned
5hkvJ01 06 Nov, 2017 3.90.1170.10 Assigned
5hkvK00 06 Nov, 2017 3.90.1030.10 Assigned
5hkvL01 06 Nov, 2017 3.30.420.100 Assigned
5hkvM00 06 Nov, 2017 Holding pen
5hkvN00 03 Nov, 2017 Holding pen
5hkvO00 06 Nov, 2017 Holding pen
5hkvP00 06 Nov, 2017 3.90.470.10 Assigned
5hkvQ00 06 Nov, 2017 3.30.70.330 Assigned
5hkvS01 03 Nov, 2017 2.40.240.10 Assigned
5hkvS02 03 Nov, 2017 2.170.120.20 Assigned
5hkvU00 06 Nov, 2017 Holding pen
5hkvV00 06 Nov, 2017 Holding pen
5hkvW00 06 Nov, 2017 3.30.1390.20 Assigned
5hkvZ01 03 Nov, 2017 Holding pen

UniProtKB Entries (23)

Accession Gene ID Taxon Description
Q2FW08 RL23_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L23
Q2FW07 RL4_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L4
Q2FUQ0 RL34_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L34
Q2FW21 RL6_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L6
Q2FW38 RL13_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L13
Q2FW33 RL17_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L17
Q2FW06 RL3_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L3
Q2FZ42 RL19_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L19
P0A0F8 RL15_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L15
Q2FZ60 RL28_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L28
Q2FXQ0 RL35_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L35
P60430 RL2_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L2
Q2FW22 RL18_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L18
Q2FW14 RL29_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L29
Q2FW16 RL14_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L14
Q2FXQ1 RL20_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L20
Q2FW17 RL24_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L24
Q2FW18 RL5_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L5
Q2FW11 RL22_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L22
P0A0G2 RL30_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L30
Q2FXT0 RL27_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L27
Q2FW13 RL16_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L16
Q2G0S0 Q2G0S0_STAA8 Staphylococcus aureus subsp. aureus NCTC 8325 50S ribosomal protein L25