PDB 5gmk

PDB Links
Overview

PDB Information

PDB	5GMK
Method	ELECTRON MICROSCOPY
Host Organism
Gene Source
Primary Citation	Structure of a yeast catalytic step I spliceosome at 3.4 angstrom resolution Wan, R., Yan, C., Bai, R., Huang, G., Shi, Y. Science
Header	Rna Binding Protein/Rna
Released	2016-07-14
Resolution	3.400
CATH Insert Date	04 Sep, 2016

PDB Images (70)

5gmk

PDB 5gmk

5gmka

PDB Chain 5gmka

5gmkA

PDB Chain 5gmkA

5gmkb

PDB Chain 5gmkb

5gmkB

PDB Chain 5gmkB

5gmkc

PDB Chain 5gmkc

5gmkC

PDB Chain 5gmkC

5gmkd

PDB Chain 5gmkd

5gmkD

PDB Chain 5gmkD

5gmke

PDB Chain 5gmke

5gmkE

PDB Chain 5gmkE

5gmkF

PDB Chain 5gmkF

5gmkg

PDB Chain 5gmkg

5gmkG

PDB Chain 5gmkG

5gmkh

PDB Chain 5gmkh

5gmkH

PDB Chain 5gmkH

5gmki

PDB Chain 5gmki

5gmkI

PDB Chain 5gmkI

5gmkj

PDB Chain 5gmkj

5gmkJ

PDB Chain 5gmkJ

5gmkk

PDB Chain 5gmkk

5gmkl

PDB Chain 5gmkl

5gmkL

PDB Chain 5gmkL

5gmkm

PDB Chain 5gmkm

5gmkM

PDB Chain 5gmkM

5gmkn

PDB Chain 5gmkn

5gmkN

PDB Chain 5gmkN

5gmko

PDB Chain 5gmko

5gmkO

PDB Chain 5gmkO

5gmkp

PDB Chain 5gmkp

5gmkP

PDB Chain 5gmkP

5gmkq

PDB Chain 5gmkq

5gmkQ

PDB Chain 5gmkQ

5gmkr

PDB Chain 5gmkr

5gmkR

PDB Chain 5gmkR

5gmks

PDB Chain 5gmks

5gmkS

PDB Chain 5gmkS

5gmkt

PDB Chain 5gmkt

5gmkT

PDB Chain 5gmkT

5gmku

PDB Chain 5gmku

5gmkv

PDB Chain 5gmkv

5gmkw

PDB Chain 5gmkw

5gmkx

PDB Chain 5gmkx

5gmky

PDB Chain 5gmky

5gmkz

PDB Chain 5gmkz

5gmkZ

PDB Chain 5gmkZ

5gmka00

CATH Domain 5gmka00

5gmkb00

CATH Domain 5gmkb00

5gmke00

CATH Domain 5gmke00

5gmkg00

CATH Domain 5gmkg00

5gmkG00

CATH Domain 5gmkG00

5gmkh00

CATH Domain 5gmkh00

5gmkH00

CATH Domain 5gmkH00

5gmki00

CATH Domain 5gmki00

5gmkI00

CATH Domain 5gmkI00

5gmkj00

CATH Domain 5gmkj00

5gmkk00

CATH Domain 5gmkk00

5gmkl00

CATH Domain 5gmkl00

5gmkm00

CATH Domain 5gmkm00

5gmkn00

CATH Domain 5gmkn00

5gmkO00

CATH Domain 5gmkO00

5gmkq01

CATH Domain 5gmkq01

5gmkq02

CATH Domain 5gmkq02

5gmks00

CATH Domain 5gmks00

5gmkS00

CATH Domain 5gmkS00

5gmku00

CATH Domain 5gmku00

5gmkw00

CATH Domain 5gmkw00

5gmkx00

CATH Domain 5gmkx00

5gmky00

CATH Domain 5gmky00

5gmkz00

CATH Domain 5gmkz00

PDB Prints

PDB Chains (45)

Chain ID	Date inserted into CATH	CATH Status
a	05 Sep, 2016	Chopped
A	05 Sep, 2016	Holding pen
b	05 Sep, 2016	Chopped
B	05 Sep, 2016	Rejected
c	05 Sep, 2016	Domchop review
C	05 Sep, 2016	Holding pen
d	05 Sep, 2016	Holding pen
D	05 Sep, 2016	Rejected
e	05 Sep, 2016	Chopped
E	05 Sep, 2016	Rejected
F	05 Sep, 2016	Holding pen
g	05 Sep, 2016	Chopped
G	05 Sep, 2016	Chopped
h	05 Sep, 2016	Chopped
H	05 Sep, 2016	Chopped
i	05 Sep, 2016	Chopped
I	05 Sep, 2016	Chopped
j	05 Sep, 2016	Chopped
J	05 Sep, 2016	Rejected
k	05 Sep, 2016	Chopped
l	05 Sep, 2016	Chopped
L	05 Sep, 2016	Rejected
m	05 Sep, 2016	Chopped
M	05 Sep, 2016	Rejected
n	05 Sep, 2016	Chopped
N	05 Sep, 2016	Rejected
o	05 Sep, 2016	Holding pen
O	05 Sep, 2016	Chopped
p	05 Sep, 2016	Holding pen
P	05 Sep, 2016	Holding pen
q	05 Sep, 2016	Chopped
Q	05 Sep, 2016	Holding pen
r	05 Sep, 2016	Holding pen
R	05 Sep, 2016	Holding pen
s	05 Sep, 2016	Chopped
S	05 Sep, 2016	Chopped
t	05 Sep, 2016	Domchop review
T	05 Sep, 2016	Holding pen
u	05 Sep, 2016	Chopped
v	05 Sep, 2016	Domchop review
w	05 Sep, 2016	Chopped
x	05 Sep, 2016	Chopped
y	05 Sep, 2016	Chopped
z	05 Sep, 2016	Chopped
Z	05 Sep, 2016	Holding pen

CATH Domains (24)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
5gmka00	08 Sep, 2016	3.30.70.330	Assigned
5gmkb00	08 Sep, 2016		Holding pen
5gmke00	29 Nov, 2016	2.30.30.100	Assigned
5gmkg00	08 Sep, 2016	2.30.30.100	Assigned
5gmkG00	30 Nov, 2016		Write scan list
5gmkh00	08 Sep, 2016	2.30.30.100	Assigned
5gmkH00	30 Nov, 2016		Write scan list
5gmki00	08 Sep, 2016	2.30.30.100	Assigned
5gmkI00	29 Nov, 2016		Write scan list
5gmkj00	08 Sep, 2016	2.30.30.100	Assigned
5gmkk00	30 Nov, 2016		Holding pen
5gmkl00	08 Sep, 2016	2.30.30.100	Assigned
5gmkm00	30 Nov, 2016	2.30.30.100	Assigned
5gmkn00	29 Nov, 2016	2.130.10.10	Assigned
5gmkO00	14 Dec, 2017	2.130.10.10	Assigned
5gmkq01	20 Feb, 2018	3.30.40.10	Assigned
5gmkq02	20 Feb, 2018		Holding pen
5gmks00	30 Nov, 2016		Holding pen
5gmkS00	29 Nov, 2016		Write scan list
5gmku00	09 Sep, 2016	2.30.30.100	Assigned
5gmkw00	09 Sep, 2016	2.30.30.100	Assigned
5gmkx00	09 Sep, 2016	2.30.30.100	Assigned
5gmky00	09 Sep, 2016	2.30.30.100	Assigned
5gmkz00	30 Nov, 2016	2.30.30.100	Assigned

UniProtKB Entries (31)

Accession	Gene ID	Taxon	Description
Q02260	SMD1_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D1
P40204	RUXG_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein G
P43321	SMD3_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D3
Q02260	SMD1_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D1
P32523	PRP19_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-processing factor 19
P32523	PRP19_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-processing factor 19
P21374	ISY1_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor ISY1
Q04048	SYF1_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor SYF1
Q12330	RUXE_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein E
P43321	SMD3_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D3
P40968	PRP17_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-processing factor 17
P40018	RSMB_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein-associated protein B
Q03654	CEF1_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor CEF1
P32523	PRP19_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-processing factor 19
Q12309	CLF1_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor CLF1
P33334	PRP8_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor 8
P53333	CWC22_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor CWC22
P54999	RUXF_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein F
Q12046	CWC2_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor CWC2
P40204	RUXG_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein G
Q03375	CWC21_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor CWC21
P54999	RUXF_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein F
Q08963	RU2A_YEAST	Saccharomyces cerevisiae S288C	U2 small nuclear ribonucleoprotein A'
P32523	PRP19_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-processing factor 19
P40567	MSL1_YEAST	Saccharomyces cerevisiae S288C	U2 small nuclear ribonucleoprotein B''
P36048	SN114_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor SNU114
Q06217	SMD2_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D2
P40018	RSMB_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein-associated protein B
Q06217	SMD2_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein Sm D2
Q12330	RUXE_YEAST	Saccharomyces cerevisiae S288C	Small nuclear ribonucleoprotein E
Q12417	PRP46_YEAST	Saccharomyces cerevisiae S288C	Pre-mRNA-splicing factor PRP46