CATH Domain: 7odcA02 XML data for domain: 7odcA02

Molscript image for 7odcA02
7odcA02
PDB coordinates for domain 7odcA02

PDB 7odc, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.10 Alanine racemase Gene3D
3.20.20.10.1
3.20.20.10.1.1
3.20.20.10.1.1.1
3.20.20.10.1.1.1.1
3.20.20.10.1.1.1.1.1

Segment boundaries for domain 7odcA02

Chopping figure for domain 7odcA02
DomainStart PDB ResidueStop PDB Residue
7odcA01 2 47
7odcA01 280 418
7odcA02 48 279

Structural Neighbourhood (17 entries)

There are 17 matching structural neighberhood comparisons for CATH ID 3.20.20.10.1.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 17 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2nvaC02 93.61 Paramecium bursaria Chlorella virus 1A207R protein 3.20.20.10 229 40 94 1.42 1.51
2p3eA02 86.93 Diaminopimelate decarboxylase [EC:4.1.1.20]Diaminopimelate decarboxylaseMetabolic pathwaysLysine biosynthesisAquifex aeolicus 3.20.20.10 223 27 94 2.00 2.11
2o0tA02 84.34 Lysine biosynthesisMetabolic pathwaysDiaminopimelate decarboxylase [EC:4.1.1.20]Diaminopimelate decarboxylaseMycobacterium tuberculosis 3.20.20.10 260 18 84 2.77 3.27
1knwA02 83.90 Lysine biosynthesisMetabolic pathwaysDiaminopimelate decarboxylase [EC:4.1.1.20]Diaminopimelate decarboxylaseProtein binding 3.20.20.10 244 15 87 2.35 2.69
1xfcB02 81.76 Alanine racemaseMycobacterium tuberculosis 3.20.20.10 216 12 88 2.75 3.12
1w8gA00 80.36 UPF0001 protein yggSEscherichia coli K-12 3.20.20.10 226 11 86 2.80 3.25
1bd0A01 79.51 Geobacillus stearothermophilusAlanine racemase 3.20.20.10 211 10 87 3.16 3.62
1rcqA02 78.82 D-Alanine metabolismPseudomonas aeruginosaAlanine racemase, catabolicAlanine racemase [EC:5.1.1.1]Metabolic pathways 3.20.20.10 206 11 85 3.47 4.04
1ct5A00 78.78 UPF0001 protein YBL036CIdentical protein bindingPyridoxal phosphate bindingSaccharomyces cerevisiae 3.20.20.10 225 9 82 3.16 3.82
3co8A02 77.95 D-Alanine metabolismAlanine racemaseOenococcus oeni PSU-1Alanine racemase [EC:5.1.1.1]Metabolic pathways 3.20.20.10 208 14 82 3.31 4.00
2fliC00 75.66 Pentose phosphate pathwayPentose and glucuronate interconversionsMetabolic pathwaysRibulose-phosphate 3-epimerase [EC:5.1.3.1]Streptococcus pyogenes serotype M1 3.20.20.70 219 9 78 3.55 4.53
1tqjC00 75.47 Ribulose-phosphate 3-epimerasePentose phosphate pathwayPentose and glucuronate interconversionsCarbon fixation in photosynthetic organismsRibulose-phosphate 3-epimerase [EC:5.1.3.1] 3.20.20.70 218 7 78 3.65 4.66
3ctlA00 75.24 [EC:5.1.3.-]D-allulose-6-phosphate 3-epimeraseAllulose 6-phosphate 3-epimerase activityProtein bindingEscherichia coli K-12 3.20.20.70 219 8 78 3.61 4.61
1q6oB00 75.05 Ascorbate and aldarate metabolism3-keto-L-gulonate-6-phosphate decarboxylase ulaDMagnesium ion binding3-dehydro-L-gulonate-6-phosphate decarboxylase [EC:4.1.1.85]3-dehydro-L-gulonate-6-phosphate decarboxylase activity 3.20.20.70 215 6 77 3.26 4.21
2w79A00 74.99 Histidine metabolismMetabolic pathwaysThermotoga maritima1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerasePhosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16] 3.20.20.70 241 10 72 3.52 4.85
3f4wA00 73.93 Pentose and glucuronate interconversionsMethane metabolismPutative hexulose 6 phosphate synthaseSalmonella enterica subsp. enterica serovar Typhimurium3-hexulose-6-phosphate synthase [EC:4.1.2.43] 3.20.20.70 211 9 76 3.50 4.55
2chrA02 73.93 Ralstonia eutropha JMP134Chloromuconate cycloisomeraseToluene and xylene degradationMuconate cycloisomerase [EC:5.5.1.1]Benzoate degradation via hydroxylation 3.20.20.120 202 8 79 3.78 4.75
Displaying entries 1 to 17 (page 1 of 1)


Domain ATOM Sequence

>pdb|7odcA02
ILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNG
VQMMTFDSEIELMKVARAHPKAKLVLRIATKFGATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVSDARCV
FDMATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYY    

Domain COMBS Sequence

>pdb|7odcA02
ILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGVPAERVIYANPCKQVSQIKYAASNG
VQMMTFDSEIELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDT
FVQAVSDARCVFDMATEVGFSMHLLDIGGGFPGSEDTKLKFEEITSVINPALDKYFPSDSGVRIIAEPGRYY    

Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:54

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:54

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 18:00

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"