CATH Domain: 6ldhA02 XML data for domain: 6ldhA02

Molscript image for 6ldhA02
6ldhA02
PDB coordinates for domain 6ldhA02

PDB 6ldh, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.90 Alpha-Beta Complex
3.90.110 L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2
3.90.110.10 L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2 Gene3D
3.90.110.10.5
3.90.110.10.5.1
3.90.110.10.5.1.1
3.90.110.10.5.1.1.1
3.90.110.10.5.1.1.1.1

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Segment boundaries for domain 6ldhA02

Chopping figure for domain 6ldhA02
DomainStart PDB ResidueStop PDB Residue
6ldhA01 1 162
6ldhA02 163 329

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.90.110.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1hyhC02 88.43 Weissella confusaL-2-hydroxyisocaproate dehydrogenase 3.90.110.10 157 24 94 1.94 2.06
1hyeA02 87.61 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Methanocaldococcus jannaschiiPyruvate metabolismMetabolic pathways 3.90.110.10 157 22 94 2.85 3.03
1o6zA01 87.52 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Pyruvate metabolismHaloarcula marismortuiGlyoxylate and dicarboxylate metabolism 3.90.110.10 161 29 95 1.98 2.08
2x0jA02 86.89 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Archaeoglobus fulgidusPyruvate metabolismMetabolic pathways 3.90.110.10 152 28 90 2.46 2.72
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|6ldhA02
CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKLK
GYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTLWD
IQKDLKF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|6ldhA02
CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKLK
GYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTLWD
IQKDLKF
BLAST against CATH

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Domain History Events (3)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "6ldh002" to "6ldhA02" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Domain assigned by lewis on 18 Jan 2007 20:52

Reassigning this domain to its previous classification as part of fragment fixing process in preparation for release v3.1.0.

Insertion by lewis on 18 Jan 2007 20:52

Rechopping chains just before release v3.1.0 in order to fix missing fragments.