CATH Domain: 5nulA00 XML data for domain: 5nulA00

Molscript image for 5nulA00
5nulA00
PDB coordinates for domain 5nulA00

PDB 5nul, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.360 Gene3D
3.40.50.360.16
3.40.50.360.16.1
3.40.50.360.16.1.1
3.40.50.360.16.1.1.1
3.40.50.360.16.1.1.1.1

Segment boundaries for domain 5nulA00

Chopping figure for domain 5nulA00
DomainStart PDB ResidueStop PDB Residue
5nulA00 1 138

Structural Neighbourhood (59 entries)

There are 59 matching structural neighberhood comparisons for CATH ID 3.40.50.360.16.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 59 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1e5dA01 89.78 Desulfovibrio gigasRubredoxin-oxygen oxidoreductase 3.40.50.360 143 23 94 1.78 1.89
1vmeA02 85.11 Thermotoga maritimaPutative uncharacterized protein 3.40.50.360 144 15 88 2.59 2.91
3d7nA00 84.70 Agrobacterium tumefaciens str. C58Flavodoxin, WrbA-like protein 3.40.50.360 153 18 84 2.06 2.44
1bvyF00 82.88 Bacillus megateriumBifunctional P-450/NADPH-P450 reductase 3.40.50.360 152 13 88 3.22 3.65
2arkA00 82.84 FlavodoxinAquifex aeolicus 3.40.50.360 180 23 73 2.37 3.21
1k68A00 79.25 Tolypothrix sp. PCC 7601Response regulator 3.40.50.2300 139 11 81 3.59 4.42
1a2oA01 78.97 Bacterial chemotaxisTwo-component systemChemotaxis response regulator protein-glutamate methylesteraseTwo-component system, chemotaxis family, response regulator CheB [EC:3.1.1.61]Salmonella enterica subsp. enterica serovar Typhimurium 3.40.50.2300 133 14 86 3.69 4.28
3cwcB01 78.31 Glycerate kinase [EC:2.7.1.31]Glycerolipid metabolismSalmonella enterica subsp. enterica serovar TyphimuriumPutative glycerate kinase 2Glycine, serine and threonine metabolism 3.40.50.10350 137 11 81 3.63 4.43
2qvgA00 78.19 Two component response regulator[EC:2.7.3.-]Legionella pneumophila subsp. pneumophila str. Philadelphia 1 3.40.50.2300 126 7 78 3.47 4.39
1ny5A01 78.02 Transcriptional regulator (NtrC family)Two-component system, NtrC family, response regulatorAquifex aeolicus 3.40.50.2300 136 10 76 3.17 4.17
1gudA01 78.00 ABC transportersMembraneD-allose transport system substrate-binding proteinD-allose-binding periplasmic proteinEscherichia coli K-12 3.40.50.2300 139 9 75 3.47 4.59
1ur5C01 77.97 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Pyruvate metabolismChloroflexus aurantiacus J-10-flMetabolic pathways 3.40.50.720 136 8 73 3.13 4.28
2ayzA00 77.63 Two-component systemTwo-component system, NarL family, capsular synthesis sensor histidine kinase RcsC [EC:2.7.13.3]Sensor kinase protein rcsCEscherichia coli K-12 3.40.50.2300 133 9 79 3.45 4.33
2qv0A00 77.56 Protein mrkEKlebsiella pneumoniae 3.40.50.2300 122 8 77 3.33 4.29
1kjnA00 77.42 Methanothermobacter thermautotrophicus str. Delta HConserved protein 3.40.50.10160 148 8 79 3.42 4.29
3bilA01 77.19 Corynebacterium glutamicumPROBABLE LACI-FAMILY TRANSCRIPTIONAL REGULATOR 3.40.50.2300 120 12 76 3.67 4.82
3cz5B00 77.09 Two-component response regulator, LuxR familyAurantimonas manganoxydans SI85-9A1 3.40.50.2300 140 7 80 3.72 4.65
3d0oA01 76.99 Pyruvate metabolismPropanoate metabolismMetabolic pathwaysCysteine and methionine metabolismGlycolysis / Gluconeogenesis 3.40.50.720 143 5 68 3.32 4.84
2qsjB00 76.94 DNA-binding response regulator, LuxR familyRuegeria pomeroyi 3.40.50.2300 122 10 76 3.70 4.82
2r25B00 76.92 MAPK signaling pathway - yeastResponse to hydrogen peroxideProtein bindingOsmosensor activityOsomolarity two-component system, sensor histidine kinase SLN1 [EC:2.7.13.3] 3.40.50.2300 131 9 77 3.02 3.89
2b4aA00 76.71 BH3024 proteinBacillus halodurans 3.40.50.2300 116 12 74 3.12 4.18
1dcfA00 76.69 Response to insectResponse to abscisic acid stimulusResponse to heatResponse to gibberellin stimulusDefense response to bacterium 3.40.50.2300 133 6 79 3.56 4.47
2fzvA00 76.59 Shigella flexneriPutative arsenical resistance proteinArsenical resistance protein ArsH 3.40.50.360 235 9 57 2.50 4.32
2qu7A01 76.57 Putative transcriptional regulatorStaphylococcus saprophyticus subsp. saprophyticus ATCC 15305 3.40.50.2300 129 6 75 3.69 4.90
1hyhA01 76.53 Weissella confusaL-2-hydroxyisocaproate dehydrogenase 3.40.50.720 141 8 70 3.31 4.71
1w25B02 76.49 Two-component systemCell cycle - CaulobacterCaulobacter vibrioidesIdentical protein bindingTwo-component system, cell cycle response regulator 3.40.50.2300 143 9 74 3.43 4.58
2jbaA00 76.45 Two-component systemPhosphate regulon transcriptional regulatory protein phoBTwo-component system, OmpR family, phosphate regulon response regulator PhoBProtein bindingEscherichia coli K-12 3.40.50.2300 125 8 78 3.68 4.66
1a04A01 76.41 Two-component systemTwo-component system, NarL family, nitrate/nitrite response regulator NarLProtein bindingEscherichia coli K-12Nitrate/nitrite response regulator protein narL 3.40.50.2300 124 8 80 3.40 4.23
3cnbA00 76.34 DNA-binding response regulator, merR familyColwellia psychrerythraea 34H 3.40.50.2300 124 10 76 3.68 4.79
3eq2B01 76.30 Pseudomonas aeruginosaProbable two-component response regulator 3.40.50.2300 103 12 68 2.92 4.24
1qo0D01 76.19 Pseudomonas aeruginosaAliphatic amidase regulator 3.40.50.2300 127 4 76 2.96 3.85
3gt7A00 76.18 Sensor proteinSyntrophus aciditrophicus SB 3.40.50.2300 131 9 77 3.69 4.76
1zgzA00 76.15 Two-component systemTorCAD operon transcriptional regulatory protein torRTwo-component system, OmpR family, torCAD operon response regulator TorRProtein bindingEscherichia coli K-12 3.40.50.2300 118 9 78 3.78 4.83
2fvyA01 76.14 Bacterial chemotaxisABC transportersMethyl-galactoside transport system substrate-binding proteinD-galactose-binding periplasmic proteinEscherichia coli K-12 3.40.50.2300 147 8 74 3.27 4.37
1srrC00 76.12 Sporulation initiation phosphotransferase FTwo-component system, response regulator, stage 0 sporulation protein FBacillus subtilisTwo-component system 3.40.50.2300 121 10 81 3.70 4.56
3cu5B00 76.02 Clostridium phytofermentans ISDgTwo component transcriptional regulator, AraC family 3.40.50.2300 129 9 84 4.13 4.87
1ys7A01 75.83 Transcriptional regulatory protein prrAMycobacterium tuberculosis 3.40.50.2300 122 9 76 3.60 4.69
2qzjA00 75.82 Two-component response regulatorClostridium difficile 630 3.40.50.2300 119 10 78 3.86 4.93
1mb3A00 75.80 Caulobacter vibrioidesTwo-component systemTwo-component system, cell cycle response regulator DivKPolar differentiation response regulatorCell cycle - Caulobacter 3.40.50.2300 115 13 71 3.30 4.65
2aefA01 75.75 Methanothermobacter thermautotrophicus str. Delta HCalcium-gated potassium channel mthK 3.40.50.720 115 7 65 3.07 4.71
2qxyA00 75.68 Thermotoga maritimaResponse regulatorTwo-component system, unclassified family, response regulator 3.40.50.2300 118 16 81 3.83 4.68
1qkkA00 75.68 Sinorhizobium melilotiTwo-component systemTwo-component system, NtrC family, C4-dicarboxylate transport response regulator DctDC4-dicarboxylate transport transcriptional regulatory protein dctD 3.40.50.2300 139 4 75 3.73 4.94
1jbeA00 75.68 Bacterial chemotaxisTwo-component systemEscherichia coli O157:H7Two-component system, chemotaxis family, response regulator CheYChemotaxis protein cheY 3.40.50.2300 125 8 77 3.63 4.68
1hyeA01 75.61 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Methanocaldococcus jannaschiiPyruvate metabolismMetabolic pathways 3.40.50.720 147 9 68 3.37 4.90
1t3gB00 75.55 Plasma membraneInterleukin 1 receptor accessory protein-likeHomo sapiensNegative regulation of exocytosisProtein binding 3.40.50.10140 146 9 84 3.78 4.49
1z0sA01 75.51 Archaeoglobus fulgidusProbable inorganic polyphosphate/ATP-NAD kinaseNAD+ kinase [EC:2.7.1.23]Nicotinate and nicotinamide metabolismMetabolic pathways 3.40.50.10330 123 9 65 3.23 4.90
1vm6B01 75.45 Dihydrodipicolinate reductase [EC:1.3.1.26]Thermotoga maritimaDihydrodipicolinate reductaseLysine biosynthesisMetabolic pathways 3.40.50.720 135 15 79 3.90 4.89
2jk1A00 75.37 Hydrogenase transcriptional regulatory protein hupR1Rhodobacter capsulatus 3.40.50.2300 138 10 78 3.81 4.87
2qr3A00 75.23 Bacteroides fragilisTwo-component system response regulator 3.40.50.2300 119 13 77 3.52 4.54
1sc6A01 75.13 Glycine, serine and threonine metabolismMetabolic pathwaysD-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]D-3-phosphoglycerate dehydrogenaseEscherichia coli K-12 3.40.50.720 133 6 77 3.68 4.75
1s8nA01 74.77 Response regulator NasTProbable transcriptional regulatory protein pdtaRMycobacterium tuberculosis 3.40.50.2300 132 6 78 3.78 4.79
1p2fA01 74.64 Thermotoga maritimaResponse regulatorTwo-component system, OmpR family, response regulator 3.40.50.2300 117 9 75 3.58 4.75
3cs3A01 74.33 Sugar-binding transcriptional regulator, LacI familyLacI family transcriptional regulatorEnterococcus faecalis 3.40.50.2300 122 8 73 3.44 4.70
1r8jB01 74.25 Circadian clock protein kaiAIdentical protein bindingCircadian clock protein KaiAEntrainment of circadian clockSynechococcus elongatus PCC 7942 3.40.50.2300 149 5 69 3.20 4.63
1mx3A01 74.22 Protein domain specific bindingTranscription factor bindingProtein C-terminus bindingViral genome replicationC-terminal-binding protein 1 3.40.50.720 132 8 78 3.64 4.65
2h3hA01 74.08 Thermotoga maritimaSugar ABC transporter, periplasmic sugar-binding proteinSimple sugar transport system substrate-binding protein 3.40.50.2300 148 3 69 3.37 4.84
2g76A01 73.94 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]D-3-phosphoglycerate dehydrogenaseGlycine, serine and threonine metabolismBrain developmentMetabolic pathways 3.40.50.720 112 11 73 3.61 4.88
1dbwB00 73.58 Sinorhizobium melilotiTranscriptional regulatory protein fixJ 3.40.50.2300 125 8 83 4.16 4.99
1wo8A00 72.76 Methylglyoxal synthase [EC:4.2.3.3]Thermus thermophilus HB8Methylglyoxal synthasePyruvate metabolism 3.40.50.1380 126 3 62 2.98 4.78
Displaying entries 1 to 59 (page 1 of 1)


Domain ATOM Sequence

>pdb|5nulA00
MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEISTKISGK
KVALFGSYGWGDGKWMRDFEERMNGYGCVVVETPLIVQNEPDEAEQDCIEFGKKIANI    

Domain COMBS Sequence

>pdb|5nulA00
MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNIDELLNEDILILGCSAMTDEVLEESEFEPFIEEISTKISGK
KVALFGSYGWGDGKWMRDFEERMNGYGCVVVETPLIVQNEPDEAEQDCIEFGKKIANI    

Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "5nul000" to "5nulA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:15

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:15

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:38

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"