CATH Domain: 4pgaA02 XML data for domain: 4pgaA02

Molscript image for 4pgaA02
4pgaA02
PDB coordinates for domain 4pgaA02

PDB 4pga, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.40 Gene3D
3.40.50.40.2
3.40.50.40.2.2
3.40.50.40.2.2.1
3.40.50.40.2.2.1.1
3.40.50.40.2.2.1.1.1

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Segment boundaries for domain 4pgaA02

Chopping figure for domain 4pgaA02
DomainStart PDB ResidueStop PDB Residue
4pgaA01 9 222
4pgaA02 223 336

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.40.50.40.2.2.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3d8uB01 77.10 Putative transcriptional regulatorVibrio parahaemolyticusLacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor 3.40.50.2300 119 12 72 3.45 4.77
2h3hA01 76.99 Thermotoga maritimaSugar ABC transporter, periplasmic sugar-binding proteinSimple sugar transport system substrate-binding protein 3.40.50.2300 148 10 64 2.75 4.28
2driA01 76.51 Bacterial chemotaxisABC transportersD-ribose-binding periplasmic proteinRibose transport system substrate-binding proteinMembrane 3.40.50.2300 125 10 72 3.45 4.74
3brsA01 75.89 Ribose transport system substrate-binding proteinBacterial chemotaxisPeriplasmic binding protein/LacI transcriptional regulatorClostridium phytofermentans ISDgABC transporters 3.40.50.2300 136 8 68 3.34 4.88
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|4pgaA02
QVDIAYSYGNVTDTAYKALAQNGAKALIHAGTGNGSVSSRVVPALQQLRKNGTQIIRSSHVNQGGFVLRNAEQPDDKNDW
VVAHDLNPEKARILAMVAMTKTQDSKELQRIFWE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|4pgaA02
QVDIAYSYGNVTDTAYKALAQNGAKALIHAGTGNGSVSSRVVPALQQLRKNGTQIIRSSHVNQGGFVLRNAEQPDDKNDW
VVAHDLNPEKARILAMVAMTKTQDSKELQRIFWE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:59

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"