CATH Domain: 4hb1A00 XML data for domain: 4hb1A00

Molscript image for 4hb1A00
4hb1A00
PDB coordinates for domain 4hb1A00

PDB 4hb1, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.5 Single alpha-helices involved in coiled-coils or other helix-helix interfaces
1.20.5.420 Immunoglobulin FC, subunit C Gene3D
1.20.5.420.8
1.20.5.420.8.1
1.20.5.420.8.1.1
1.20.5.420.8.1.1.1
1.20.5.420.8.1.1.1.1

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Segment boundaries for domain 4hb1A00

Chopping figure for domain 4hb1A00
DomainStart PDB ResidueStop PDB Residue
4hb1A00 1 121

Structural Neighbourhood (33 entries)

There are 33 matching structural neighberhood comparisons for CATH ID 1.20.5.420.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 33 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2e5yA02 90.30 ATP synthase epsilon chainBacillus sp. PS3 1.20.5.440 45 9 93 2.32 2.49
2jdiH02 89.91 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]Huntington's diseaseOxidative phosphorylationParkinson's diseaseBos taurus 1.20.5.440 42 11 95 1.92 2.01
2ck3G01 87.74 Bos taurusATP synthase subunit gamma, mitochondrialProtein binding 1.10.287.80 61 11 70 1.37 1.94
1kfdA02 82.71 Pyrimidine metabolismNucleotide excision repairDNA replicationPurine metabolismMetabolic pathways 1.20.1060.10 71 13 60 2.94 4.85
2imlA02 82.58 Hypothetical proteinArchaeoglobus fulgidusPutative uncharacterized protein 1.20.58.290 73 13 58 1.83 3.11
2pmrA00 82.42 Hypothetical proteinMethanothermobacter thermautotrophicus str. Delta HPutative uncharacterized protein 1.20.1270.90 70 9 58 1.35 2.30
1jekA00 82.30 Visna/maedi virus EV1 KV1772Envelope glycoprotein gp160 1.20.5.440 40 2 52 0.46 0.88
2zkoA00 81.04 Non-structural protein 1Influenza A virus (A/Puerto Rico/8/1934(H1N1)) 1.10.287.10 70 4 58 2.01 3.43
1kilE00 79.48 Complexin-1Syntaxin-1 bindingRattus norvegicusDendriteSynaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex 1.20.5.580 41 9 50 2.43 4.86
1lq7A00 79.06 1.20.1270.70 67 9 55 1.42 2.57
1lreA00 78.45 Calcium ion bindingAlpha-2-macroglobulin receptor-associated proteinVesicle-mediated transportLow-density lipoprotein receptor bindingCell proliferation 1.20.81.10 81 11 54 2.33 4.29
3cp1A00 78.06 Human immunodeficiency virus type 1 lw12.3 isolateEnvelope glycoprotein gp160 1.10.287.210 73 11 60 2.61 4.33
1ozhA03 77.61 Acetolactate synthase, catabolicKlebsiella pneumoniae 1.20.5.740 24 4 50 2.31 4.62
1omiA02 77.32 Listeria monocytogenesListeriolysin regulatory protein 1.20.5.460 27 11 43 0.56 1.30
1lvfB00 77.16 Rattus norvegicusSyntaxin-6Syntaxin 6SNARE interactions in vesicular transport 1.20.58.90 104 20 42 1.11 2.62
2rldB00 76.66 Bacteroides thetaiotaomicronPutative uncharacterized protein 1.20.1440.60 104 6 40 0.99 2.45
1ow6A01 76.52 Focal adhesion kinase 1Focal adhesionCytoskeletonIntegrin-mediated signaling pathwayHomo sapiens 1.20.5.540 30 3 45 2.00 4.40
2r44A01 75.59 Cytophaga hutchinsonii ATCC 33406MoxR-like ATPase [EC:3.6.3.-]Putative uncharacterized protein 1.20.5.420 26 7 45 0.91 2.00
2g3aA01 75.56 Agrobacterium tumefaciens str. C58Acetyltransferase 1.20.5.540 31 0 54 2.09 3.83
1t6uD00 75.29 Superoxide dismutase [EC:1.15.1.1]Streptomyces coelicolorSuperoxide dismutase [Ni] 1.20.120.400 116 6 37 1.68 4.43
2e2aA00 75.10 Lactococcus lactis subsp. lactisLactose-specific phosphotransferase enzyme IIA component 1.20.58.80 104 6 42 1.56 3.69
1fdoA05 75.06 Methane metabolismMetabolic pathwaysGlyoxylate and dicarboxylate metabolismFormate dehydrogenase HFormate dehydrogenase, alpha subunit [EC:1.2.1.2] 1.20.5.460 27 7 45 1.47 3.23
2pihA00 74.99 Bacillus subtilisUncharacterized protein ymcA 1.20.1500.10 121 25 36 0.88 2.42
2wdqD00 74.77 Citrate cycle (TCA cycle)Oxidative phosphorylationMetabolic pathwaysBenzoate degradation via CoA ligationButanoate metabolism 1.20.1300.10 105 6 41 2.05 4.89
1k87A01 74.43 Arginine and proline metabolismMetabolic pathwaysAlanine, aspartate and glutamate metabolism1-pyrroline-5-carboxylate dehydrogenase activityBifunctional protein putA 1.20.5.550 52 6 44 2.06 4.66
2qsiA02 71.68 Putative hydrogenase expression/formation protein hupGHydrogenase-1 operon protein HyaERhodopseudomonas palustris 1.20.5.510 27 11 40 1.73 4.23
2fjcB00 70.43 Treponema pallidumStarvation-inducible DNA-binding proteinAntigen TpF1 1.20.1260.10 156 9 28 0.79 2.80
2qiwA02 70.11 Corynebacterium glutamicumPEP phosphonomutase and related enzymes 1.20.5.510 18 5 36 0.68 1.87
2uuiA00 69.53 Arachidonic acid metabolismLeukotriene-C4 synthase activityLeukotriene-C4 synthase [EC:4.4.1.20]MicrosomeIntegral to membrane 1.20.120.550 155 11 28 1.35 4.76
1d66B02 67.82 Regulatory protein GAL4NucleusSequence-specific DNA binding transcription factor activityTranscription activator activityPositive regulation of transcription by galactose 1.20.5.640 15 13 34 0.54 1.58
1v54C02 67.72 Cytochrome c oxidase subunit 3Bos taurus 1.20.120.80 191 18 23 0.73 3.17
1sj7B00 67.54 Mus musculusTalin-1Focal adhesionCell-substrate junction assemblyCortical actin cytoskeleton organization 1.20.1420.10 170 4 25 1.04 4.02
1mkmA02 66.52 Thermotoga maritimaTranscriptional regulator, IclR family 1.20.5.640 14 14 31 0.64 2.01
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Displaying entries 1 to 33 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|4hb1A00
EELLKQALQQAQQLLQQAQELAKEELLKQALQQAQQLLQQAQEL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|4hb1A00
SSEELLKQALQQAQQLLQQAQELAKKGGGEELLKQALQQAQQLLQQAQEL
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "4hb1000" to "4hb1A00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:17

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"