CATH Domain: 3silA00 XML data for domain: 3silA00

Molscript image for 3silA00
3silA00
PDB coordinates for domain 3silA00

PDB 3sil, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.120 6 Propellor
2.120.10 Neuraminidase
2.120.10.10 Gene3D
2.120.10.10.2
2.120.10.10.2.1
2.120.10.10.2.1.1
2.120.10.10.2.1.1.1
2.120.10.10.2.1.1.1.1

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Segment boundaries for domain 3silA00

Chopping figure for domain 3silA00
DomainStart PDB ResidueStop PDB Residue
3silA00 4 382

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 2.120.10.10.2.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1n1tA01 85.89 Trypanosoma rangeliSialidase 2.120.10.10 386 27 90 2.10 2.32
1w8oA01 82.48 Micromonospora viridifaciensSialidase 2.120.10.10 354 20 87 2.67 3.07
2jkbA02 81.54 Sialidase BSialidase-1 [EC:3.2.1.18]Sphingolipid metabolismOther glycan degradationStreptococcus pneumoniae 2.120.10.10 371 16 85 2.77 3.24
1w0pA02 81.15 Vibrio choleraeSialidase 2.120.10.10 377 17 87 2.93 3.34
1v0eD02 75.06 Enterobacteria phage K1FEndo-N-acetylneuraminidase 2.120.10.10 360 10 79 3.52 4.42
2p4oA01 72.15 Nostoc sp. PCC 7120All0351 protein 2.120.10.30 285 8 65 3.25 4.93
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Displaying entries 1 to 6 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3silA00
EKSVVFKAEGEHFTDQKGNTIVGSGSGGTTKYFRIPAMCTTSKGTIVVFADARHNTASDQSFIDTAAARSTDGGKTWNKK
IAIYNDRVNSKLSRVMDPTCIVANIQGRETILVMVGKWNNNDKTWGAYRDKAPDTDWDLVLYKSTDDGVTFSKVETNIHD
IVTKNGTISAMLGGVGSGLQLNDGKLVFPVQMVRTKNITTVLNTSFIYSTDGITWSLPSGYCEGFGSENNIIEFNASLVN
NIRNSGLRRSFETKDFGKTWTEFPPMDKKVDNRNHGVQGSTITIPSGNKLVAAHSSAQNKNNDYTRSDISLYAHNLYSGE
VKLIDDFYPKVGNASGAGYSCLSYRKNVDKETLYVVYEANGSIEFQDLSRHLPVIKSYN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3silA00
EKSVVFKAEGEHFTDQKGNTIVGSGSGGTTKYFRIPAMCTTSKGTIVVFADARHNTASDQSFIDTAAARSTDGGKTWNKK
IAIYNDRVNSKLSRVMDPTCIVANIQGRETILVMVGKWNNNDKTWGAYRDKAPDTDWDLVLYKSTDDGVTFSKVETNIHD
IVTKNGTISAMLGGVGSGLQLNDGKLVFPVQMVRTKNITTVLNTSFIYSTDGITWSLPSGYCEGFGSENNIIEFNASLVN
NIRNSGLRRSFETKDFGKTWTEFPPMDKKVDNRNHGVQGSTITIPSGNKLVAAHSSAQNKNNDYTRSDISLYAHNLYSGE
VKLIDDFYPKVGNASGAGYSCLSYRKNVDKETLYVVYEANGSIEFQDLSRHLPVIKSYN
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "3sil000" to "3silA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:10

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"