CATH Domain: 3psgA02 XML data for domain: 3psgA02

Molscript image for 3psgA02
3psgA02
PDB coordinates for domain 3psgA02

PDB 3psg, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.70 Cathepsin D, subunit A; domain 1
2.40.70.10 Acid Proteases Gene3D
2.40.70.10.6
2.40.70.10.6.1
2.40.70.10.6.1.1
2.40.70.10.6.1.1.1
2.40.70.10.6.1.1.1.1

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Segment boundaries for domain 3psgA02

Chopping figure for domain 3psgA02
DomainStart PDB ResidueStop PDB Residue
3psgA01 1 170
3psgA02 171 325

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 2.40.70.10.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1dpjA02 91.81 Cellular response to starvationSporulation resulting in formation of a cellular sporeProteolysis involved in cellular protein catabolic processFungal-type vacuole lumenSaccharopepsin 2.40.70.10 154 36 99 1.56 1.57
1hrnA02 89.68 Renin-angiotensin systemAngiotensin maturationRegulation of MAPKKK cascadeExtracellular spaceRenin 2.40.70.10 158 36 97 2.30 2.36
2aprA02 88.51 RhizopuspepsinRhizopus microsporus var. chinensis 2.40.70.10 149 35 94 2.27 2.39
1wkrA02 85.61 Irpex lacteusPolyporopepsin 2.40.70.10 170 27 86 2.29 2.65
1j71A02 85.57 Candida tropicalisCandidapepsin 2.40.70.10 161 30 89 2.47 2.76
1lyaB00 84.02 LysosomeAspartic-type endopeptidase activityCathepsin D [EC:3.4.23.5]Homo sapiensCathepsin D 2.40.70.10 241 49 64 2.01 3.13
1mppA02 83.39 Rhizomucor pusillusMucorpepsin 2.40.70.10 175 17 85 2.94 3.43
2zjlA02 82.62 Beta-secretase 1Integral to plasma membraneBeta-aspartyl-peptidase activityProtein bindingBeta-amyloid metabolic process 2.40.70.10 197 21 69 2.63 3.81
1pfzA02 81.90 Plasmepsin II [EC:3.4.23.39]Plasmepsin-2Plasmodium falciparum 2.40.70.10 213 30 69 3.40 4.93
1b5fB00 81.14 Preprocardosin ACynara cardunculus 2.40.70.10 87 43 52 1.70 3.21
1t6eX02 80.75 Triticum aestivumXylanase inhibitor 2.40.70.10 187 11 81 3.11 3.83
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Displaying entries 1 to 11 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3psgA02
DSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCS
SIDSLPDIVFTIDGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3psgA02
DSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCS
SIDSLPDIVFTIDGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPV
BLAST against CATH

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Domain History Events (3)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "3psg002" to "3psgA02" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Domain assigned by lewis on 18 Jan 2007 20:49

Reassigning this domain to its previous classification as part of fragment fixing process in preparation for release v3.1.0.

Insertion by lewis on 18 Jan 2007 20:49

Rechopping chains just before release v3.1.0 in order to fix missing fragments.