CATH Domain: 3pnpA00 XML data for domain: 3pnpA00

Molscript image for 3pnpA00
3pnpA00
PDB coordinates for domain 3pnpA00

PDB 3pnp, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1580 Gene3D
3.40.50.1580.5
3.40.50.1580.5.1
3.40.50.1580.5.1.1
3.40.50.1580.5.1.1.2
3.40.50.1580.5.1.1.2.1

[top]
Segment boundaries for domain 3pnpA00

Chopping figure for domain 3pnpA00
DomainStart PDB ResidueStop PDB Residue
3pnpA00 1 284

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.40.50.1580.5.1.1.2.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1g2oA00 89.00 Pyrimidine metabolismPurine metabolismNicotinate and nicotinamide metabolismMetabolic pathwaysPurine-nucleoside phosphorylase [EC:2.4.2.1] 3.40.50.1580 262 36 91 1.75 1.90
1zosA00 80.65 Cysteine and methionine metabolismMetabolic pathwaysS-adenosylhomocysteine/5'-methylthioadenosine nucleosidase [EC:3.2.2.9]5'-methylthioadenosine / S-adenosylhomocysteine nucleosidaseStreptococcus pneumoniae R6 3.40.50.1580 230 13 79 3.07 3.84
1je0C00 80.21 S-methyl-5'-thioadenosine phosphorylase5'-methylthioadenosine phosphorylase [EC:2.4.2.28]Cysteine and methionine metabolismSulfolobus solfataricusMetabolic pathways 3.40.50.1580 227 11 82 3.45 4.20
3emvA01 79.29 Pyrimidine metabolismUridine phosphorylase, putativePlasmodium vivaxUridine phosphorylase [EC:2.4.2.3]Metabolic pathways 3.40.50.1580 241 7 84 4.10 4.87
[1]
Displaying entries 1 to 4 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|3pnpA00
MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVM
MQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFP
AMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL
ITNKVAAQKLEQFVSLLMASIPV
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|3pnpA00
MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVM
MQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFP
AMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSL
ITNKVIMDTESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPVSGHTG
BLAST against CATH

[top]
Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "3pnp000" to "3pnpA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:20

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:20

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:42

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"