CATH Domain: 3htsB00 XML data for domain: 3htsB00

Molscript image for 3htsB00
3htsB00
PDB coordinates for domain 3htsB00

PDB 3hts, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.10 "winged helix" repressor DNA binding domain Gene3D
1.10.10.10.7
1.10.10.10.7.1
1.10.10.10.7.1.1
1.10.10.10.7.1.1.1
1.10.10.10.7.1.1.1.1

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Segment boundaries for domain 3htsB00

Chopping figure for domain 3htsB00
DomainStart PDB ResidueStop PDB Residue
3htsB00 192 282

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 1.10.10.10.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1hksA00 83.94 NucleusResponse to heatProtein bindingDrosophila melanogasterPolytene chromosome 1.10.10.10 106 42 77 2.69 3.48
1pueE00 83.29 Lymphoid progenitor cell differentiationPathways in cancerMyeloid dendritic cell differentiationErythrocyte differentiationAcute myeloid leukemia 1.10.10.10 88 10 85 2.78 3.26
1duxC00 83.18 ETS domain-containing protein Elk-1Positive regulation of transcription from RNA polymerase II promoterPrion diseasesInsulin signaling pathwayEndometrial cancer 1.10.10.10 86 13 88 3.41 3.86
1yo5C00 83.15 SAM pointed domain-containing ETS transcription factorHomo sapiensSAM pointed domain-containing Ets transcription factorProtein bindingMulticellular organismal development 1.10.10.10 88 12 90 4.04 4.44
1k78B00 82.18 Mus musculusProtein C-ets-1Positive regulation of transcription from RNA polymerase II promoterTranscription factor complexProtein binding 1.10.10.10 102 19 74 2.99 4.01
3jtgA01 82.08 ETS-related transcription factor Elf-3E74-like factor 3/5Mus musculusSequence-specific DNA binding transcription factor activityEmbryo development 1.10.10.10 85 14 89 3.43 3.84
2pi0A01 79.87 Interferon regulatory factor 3Interferon regulatory factor 3RNA polymerase II transcription factor activityTranscription from RNA polymerase II promoterCytosolic DNA-sensing pathway 1.10.10.10 96 12 77 2.88 3.74
2irfG00 78.84 Mus musculusInterferon regulatory factor 2Interferon regulatory factor 2 1.10.10.10 109 12 72 3.26 4.50
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3htsB00
MARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQNNDSRWEFEN
ER
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3htsB00
GSRRASVGSMARPAFVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQD
VKSGSMLSNNDSRWEFENERHA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"