CATH Domain: 3grsA01 XML data for domain: 3grsA01

Molscript image for 3grsA01
3grsA01
PDB coordinates for domain 3grsA01

PDB 3grs, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.50 3-Layer(bba) Sandwich
3.50.50 FAD/NAD(P)-binding domain
3.50.50.60 Gene3D
3.50.50.60.10
3.50.50.60.10.1
3.50.50.60.10.1.1
3.50.50.60.10.1.1.1
3.50.50.60.10.1.1.1.1

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Segment boundaries for domain 3grsA01

Chopping figure for domain 3grsA01
DomainStart PDB ResidueStop PDB Residue
3grsA01 18 160
3grsA01 290 365
3grsA02 161 289
3grsA03 366 478

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 3.50.50.60.10.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2nvkX01 90.18 Protein homodimerization activityThioredoxin reductase 1, mitochondrialThioredoxin-disulfide reductase activityDetermination of adult lifespanDrosophila melanogaster 3.50.50.60 230 38 93 1.29 1.39
1fecB01 89.71 Trypanothione reductaseCrithidia fasciculata 3.50.50.60 237 36 90 1.38 1.52
1xdiA01 88.76 Citrate cycle (TCA cycle)Valine, leucine and isoleucine degradationPyruvate metabolismGlycine, serine and threonine metabolismMetabolic pathways 3.50.50.60 218 25 94 1.74 1.85
1xhcA01 83.42 Pyrococcus furiosusNADH oxidase /nitrite reductase 3.50.50.60 180 20 78 2.31 2.94
1trbA01 83.41 Pyrimidine metabolismThioredoxin reductase (NADPH) [EC:1.8.1.9]Thioredoxin reductaseProtein bindingEscherichia coli K-12 3.50.50.60 187 20 80 3.86 4.80
3fbsB01 82.12 Agrobacterium tumefaciens str. C58Oxidoreductase 3.50.50.60 188 17 78 3.21 4.11
1q1rA01 81.98 Putidaredoxin reductasePseudomonas putida 3.50.50.60 195 18 81 3.23 3.95
1nhpA01 80.93 NADH peroxidaseNADH peroxidase [EC:1.11.1.1]Enterococcus faecalis 3.50.50.60 167 16 65 2.09 3.18
1fcdA01 80.25 Allochromatium vinosumSulfide dehydrogenase [flavocytochrome c] flavoprotein chain 3.50.50.60 188 16 77 2.83 3.65
1gpeA01 76.66 Penicillium amagasakienseGlucose oxidase 3.50.50.60 204 11 60 2.74 4.51
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|3grsA01
VASYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWR
VIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPGRVPNTKDLSLNKLGIQ
TDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|3grsA01
VASYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWR
VIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPGRVPNTKDLSLNKLGIQ
TDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYN
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "3grs001" to "3grsA01" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:30

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:57

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"